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#NEXUS
begin trees;
translate
1 MorNa6,
2 ClownNa6,
3 AraNa6,
4 puffNa6,
5 NewZebra,
6 SterNa6,
7 eelNa6,
8 catNa6,
9 AptNa6,
10 PinniNa6,
11 tetra;
tree rep1BEST = [&U][!GarliScore -13315.772][!GarliModel S 0.541083 0.300389 2.158528 M1 r 1.96588 2.57892 1.41068 1.41068 3.72213 1.00000 e 0.31012 0.17667 0.29716 0.21605 a 0.40969 M2 r 4.38001 7.08451 1.60936 7.08451 4.38001 1.00000 e 0.26922 0.16358 0.16049 0.40670 a 0.36093 M3 r 1.00000 4.93590 3.39070 0.45684 4.93590 1.00000 e 0.15654 0.35368 0.28766 0.20212 a 4.01423 p 0.03350 ](1:0.21759518,(3:0.12609984,((4:0.05332794,11:0.06160710):0.18946162,(5:0.14365194,(8:0.09122513,(9:0.05810216,(6:0.11278706,(7:0.09080192,10:0.10109035):0.05163352):0.02472848):0.07917932):0.05294966):0.04642114):0.06297315):0.02293784,2:0.10628007);
tree rep2 = [&U][!GarliScore -13315.77229666][!GarliModel S 0.541345 0.300381 2.158273 M1 r 1.96172 2.57460 1.40818 1.40818 3.71484 1.00000 e 0.31015 0.17669 0.29714 0.21602 a 0.40961 M2 r 4.40047 7.11569 1.61706 7.11569 4.40047 1.00000 e 0.26920 0.16358 0.16053 0.40669 a 0.36105 M3 r 1.00000 4.93800 3.39310 0.45719 4.93800 1.00000 e 0.15654 0.35368 0.28766 0.20212 a 4.01602 p 0.03354 ](2:0.10626455,(((11:0.06161183,4:0.05330808):0.18948346,(5:0.14366753,((9:0.05810558,(6:0.11278082,(7:0.09078922,10:0.10108717):0.05164893):0.02472738):0.07918203,8:0.09121671):0.05293968):0.04640997):0.06297128,3:0.12608006):0.02294454,1:0.21758982);
tree rep3 = [&U][!GarliScore -13315.77224255][!GarliModel S 0.540836 0.300086 2.159077 M1 r 1.96446 2.57738 1.40996 1.40996 3.71994 1.00000 e 0.31014 0.17667 0.29716 0.21603 a 0.40977 M2 r 4.38218 7.08739 1.61042 7.08739 4.38218 1.00000 e 0.26921 0.16357 0.16049 0.40673 a 0.36094 M3 r 1.00000 4.93832 3.39276 0.45687 4.93832 1.00000 e 0.15654 0.35368 0.28765 0.20213 a 4.00776 p 0.03342 ](2:0.10629075,(((4:0.05333074,11:0.06162012):0.18950693,(5:0.14367501,(8:0.09123564,(9:0.05810956,((7:0.09080952,10:0.10110478):0.05165007,6:0.11280368):0.02472727):0.07919223):0.05296064):0.04642498):0.06299376,3:0.12611788):0.02294343,1:0.21765011);
tree rep4 = [&U][!GarliScore -13315.77217788][!GarliModel S 0.540963 0.300207 2.158830 M1 r 1.96456 2.57739 1.40997 1.40997 3.72040 1.00000 e 0.31015 0.17665 0.29715 0.21604 a 0.40965 M2 r 4.38364 7.09014 1.61093 7.09014 4.38364 1.00000 e 0.26922 0.16357 0.16049 0.40673 a 0.36086 M3 r 1.00000 4.93944 3.39448 0.45719 4.93944 1.00000 e 0.15653 0.35369 0.28766 0.20212 a 4.01150 p 0.03349 ](1:0.21760998,(((11:0.06163237,4:0.05331949):0.18948609,((8:0.09121350,(9:0.05809253,((7:0.09080617,10:0.10108228):0.05163812,6:0.11278987):0.02474678):0.07918892):0.05295520,5:0.14366297):0.04643880):0.06295288,3:0.12610141):0.02294421,2:0.10625545);
tree rep5 = [&U][!GarliScore -13315.77223006][!GarliModel S 0.541067 0.300689 2.158244 M1 r 1.96243 2.57513 1.40854 1.40854 3.71682 1.00000 e 0.31016 0.17668 0.29715 0.21601 a 0.40971 M2 r 4.38087 7.08608 1.60937 7.08608 4.38087 1.00000 e 0.26923 0.16359 0.16050 0.40668 a 0.36115 M3 r 1.00000 4.93780 3.39315 0.45723 4.93780 1.00000 e 0.15654 0.35368 0.28767 0.20211 a 4.01707 p 0.03353 ](1:0.21757792,(((5:0.14364584,(8:0.09121837,(9:0.05810218,(6:0.11278051,(10:0.10108817,7:0.09079318):0.05163517):0.02472655):0.07917323):0.05294520):0.04642154,(4:0.05332531,11:0.06160436):0.18944432):0.06296281,3:0.12609271):0.02293983,2:0.10627390);
end;
[M1
begin paup;
clear;
gett file=3diffModels.byCodonPos.best.all.tre storebr;
lset userbr nst=6 rclass=( 0 1 2 2 3 4 ) rmat=(1.96587554 2.57891825 1.41068018 1.41068018 3.72213378) base=(0.31012353 0.17666541 0.29716350) rates=gamma shape= 0.40969102 ncat=4 pinv= 0.00000000;
end;
]
[M2
begin paup;
clear;
gett file=3diffModels.byCodonPos.best.all.tre storebr;
lset userbr nst=6 rclass=( 0 1 2 1 0 3 ) rmat=(4.38001120 7.08450573 1.60935984 7.08450573 4.38001120) base=(0.26922421 0.16357952 0.16049220) rates=gamma shape= 0.36092727 ncat=4 pinv= 0.00000000;
end;
]
[M3
begin paup;
clear;
gett file=3diffModels.byCodonPos.best.all.tre storebr;
lset userbr nst=6 rclass=( 0 1 2 3 1 0 ) rmat=(1.00000000 4.93590137 3.39069798 0.45684430 4.93590137) base=(0.15654232 0.35367871 0.28765655) rates=gamma shape= 4.01423139 ncat=4 pinv= 0.03350150;
end;
]
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