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#NEXUS
begin trees;
translate
1 MorNa6,
2 ClownNa6,
3 AraNa6,
4 puffNa6,
5 NewZebra,
6 SterNa6,
7 eelNa6,
8 catNa6,
9 AptNa6,
10 PinniNa6,
11 tetra;
tree bestREP2 = [&U][!GarliScore -6237.258402][!GarliModel e 0.05006 0.02522 0.04579 0.05796 0.07502 0.05608 0.00778 0.08819 0.04880 0.11266 0.04378 0.05006 0.02961 0.02522 0.03726 0.05520 0.04441 0.09058 0.02170 0.03463 a 0.46160 ](((7:0.14599226,10:0.09055204):0.09024955,6:0.16570677):0.03527064,9:0.05078852,(8:0.05838226,((4:0.02994310,11:0.05488274):0.10831868,(5:0.06486452,((2:0.04405548,3:0.04678517):0.01139601,1:0.22237979):0.03096996):0.01020390):0.02406689):0.04011937);
end;
[the rate matrix is LG]
begin garli;
a 0.46160
r 243.500 38.656 101.598 24.819 202.114 35.106 14.657 52.486 38.675 109.961 27.080 115.206 94.882 41.586 462.446 209.301 249.250 17.679 21.420 6.120 0.342 108.123 55.689 62.662 31.366 1.298 58.110 87.426 51.728 7.374 8.297 52.294 272.397 111.863 191.672 65.557 114.020 512.992 1.704 82.657 90.697 1.046 27.681 1.475 2.499 496.584 38.588 51.201 12.126 121.332 41.661 3.714 2.924 13.217 1.840 34.127 41.467 4.330 176.791 6.816 16.996 52.994 41.030 403.888 35.606 59.867 59.141 23.971 7.616 11.743 8.764 66.732 108.855 2.340 253.635 175.976 8.758 9.241 3.508 5.158 35.396 16.142 64.046 240.373 763.432 30.472 0.852 29.019 4.330 13.651 140.640 19.268 26.214 38.171 170.218 12.701 7.503 26.266 5.349 10.652 68.211 35.836 43.286 441.125 49.779 470.891 237.387 96.850 57.157 11.643 58.408 519.152 15.561 405.499 418.074 18.734 7.658 7.127 12.423 6.271 101.128 1041.770 10.923 22.747 13.451 64.234 209.847 38.184 316.401 618.860 73.241 111.216 18.118 4.882 12.907 617.519 6.694 24.365 56.980 29.529 17.833 29.635 166.574 60.617 29.314 36.294 9.768 163.622 47.361 33.942 197.646 185.746 68.105 47.085 15.827 165.890 73.554 392.126 195.720 8.187 4.439 59.873 61.073 32.531 130.905 55.905 29.006 9.306 8.767 274.689 119.723 105.666 20.576 23.107 25.174 83.950 56.641 16.717 58.071 30.761 633.164 9.623 24.345 39.184 214.061 13.776 24.050 18.539 24.390 308.333 ;
end;
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