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#NEXUS
Begin trees; [Treefile saved Wed Feb 16 13:33:03 2011]
[!
>Data file = /home/zwickl/googleCodeRepo/branches/clean-partitioning/tests/moore86x30.nex
>Heuristic search settings:
> Optimality criterion = parsimony
> Character-status summary:
> Of 30 total characters:
> All characters are of type 'unord'
> All characters have equal weight
> 6 characters are constant
> 5 variable characters are parsimony-uninformative
> Number of parsimony-informative characters = 19
> Gaps are treated as "missing"
> Starting tree(s) obtained via stepwise addition
> Addition sequence: simple (reference taxon = Acorus)
> Number of trees held at each step during stepwise addition = 1
> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
> Steepest descent option not in effect
> Initial 'MaxTrees' setting = 100
> Zero-length branches not collapsed
> 'MulTrees' option not in effect; only 1 tree will be saved
> Topological constraints not enforced
> Trees are unrooted
>
>Heuristic search completed
> Total number of rearrangements tried = 433936
> Score of best tree(s) found = 93
> Number of trees retained = 1
> Time used = <1 sec (CPU time = 0.06 sec)
]
Translate
1 Acorus,
2 Amborella,
3 Anethum,
4 Antirrhinum,
5 Arabidopsis,
6 Atropa,
7 Aucuba,
8 Berberidopsis,
9 Brassica,
10 Bulnesia,
11 Buxus,
12 Calycanthus,
13 Ceratophyllum,
14 Chloranthus,
15 Citrus,
16 Coffea,
17 Cornus,
18 Cucumis,
19 Cuscuta,
20 Cycas,
21 Daucus,
22 Dillenia,
23 Dioscorea,
24 Drimys,
25 Ehretia,
26 Elaeis,
27 Epifagus,
28 Eucalyptus,
29 Euonymus,
30 Ficus,
31 Ginkgo,
32 Glycine,
33 Gossypium,
34 Gunnera,
35 Helianthus,
36 Heuchera,
37 Ilex,
38 Illicium,
39 Ipomoea,
40 Jasminum,
41 Lactuca,
42 Lemna,
43 Liquidambar,
44 Liriodendron,
45 Lonicera,
46 Lotus,
47 Manihot,
48 Medicago,
49 Meliosma,
50 Morus,
51 Musa,
52 Nandina,
53 Nelumbo,
54 Nerium,
55 Nicotiana,
56 Nuphar,
57 Nymphaea,
58 Oenothera,
59 Oryza,
60 Oxalis,
61 Panax,
62 Passiflora,
63 Pelargonium,
64 Phalaenopsis,
65 Phaseolus,
66 Phoradendron,
67 Pinus,
68 Piper,
69 Platanus,
70 Plumbago,
71 Populus,
72 Quercus,
73 Ranunculus,
74 Rhododendron,
75 Scaevola,
76 Solanum_lycopersicum,
77 Spinacia,
78 Staphylea,
79 Trachelium,
80 Triticum,
81 Trochodendron,
82 Typha,
83 Vitis,
84 Ximenia,
85 Yucca,
86 Zea
;
tree PAUP_1 = [&U] (1,(((((((((((((((((((((((((((((((((((((((((2,3,34),(((((((((4,19,27,6),7),16),25),55),76),32),70),78)),(((8,22),36),43)),10),11),14),((((15,(35,41)),71),(29,47)),60)),(((17,(39,54)),48),52)),(((18,42),46),(56,57))),24),26),28),((30,50),(((37,68),(65,84)),73))),38),44),(12,51)),((5,9),(13,33))),20),(((53,(64,66)),77),85)),69),72),81),83),23),31),40),45),49),21),58),59),61),62),63),67),74),75),79),80),82),86));
End;
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