File: n.G4.start

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garli 2.1-9
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#NEXUS

begin trees;
translate
 1 MorNa6,
 2 ClownNa6,
 3 AraNa6,
 4 puffNa6,
 5 NewZebra,
 6 SterNa6,
 7 eelNa6,
 8 catNa6,
 9 AptNa6,
 10 PinniNa6,
 11 tetra;
tree bestREP2 = [&U][!GarliScore -13930.518123][!GarliModel  r  1.53159 3.88003 1.55869 1.28339 4.73849 1.00000 e 0.24425 0.24251 0.24974 0.26350 a 1.25046 p 0.30177 ]((8:0.09946229,(9:0.05193751,(6:0.10492481,(7:0.08952527,10:0.10060054):0.04846139):0.02384170):0.06722100):0.04417065,((4:0.05079817,11:0.05129394):0.15580771,((2:0.10536255,1:0.20236259):0.02015659,3:0.10962909):0.05348449):0.04497161,5:0.15298556);
end;
begin paup;
clear;
gett file=21.GTRIG.best.tre storebr;
lset userbr nst=6 rmat=(1.531593 3.880025 1.558690 1.283386 4.738494) base=( 0.244246 0.242510 0.249740) rates=gamma shape=1.250460 ncat=4 pinv=0.301772;
end;
begin garli;
M1 r  1.53159 3.88003 1.55869 1.28339 4.73849 1.00000 e 0.24425 0.24251 0.24974 0.26350 a 1.25046 p 0.30177 ;
end;