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|
<html>
<head>
<title>
SSB
</title>
</head>
<h1 align=center>
SSB
</h1>
<hr size="3">
<font color=#880000>
<b>
NAME
<br>
</b>
</font>
SSB - change drawing style for disulfide bonds.
<br><br>
<font color=#880000>
<b>
SYNOPSIS
<br>
</b>
</font>
SSB style
<br><br>
<font color=#880000>
<b>
DESCRIPTION
<br>
</b>
</font>
Change drawing style for disulfide bonds. Disulfide bond style is defined
separately from atom style. This command does not affect the ordinary
covalent bonds: the command BONDS should be used for that purpose. Note
that there is no separate keyword for curved bonds and sticks (nice style):
the bond curvature is defined by the command
<a href="pro.html">
PROBE
</a>
.
<br><br>
<table border=2 cellspacing=2 cellpading=0>
<td align="left">
STYLE
</td>
<td align="left">
THICKNESS
</td>
<td align="left">
TYPE
</td>
<tr>
<td align="left">
0
</td>
<td align="left">
Invisible bonds.
</td>
<td align="left">
Fixed width.
</td>
<tr>
<td align="left">
1
</td>
<td align="left">
A single line.
</td>
<td align="left">
Fixed width.
</td>
<tr>
<td align="left">
2
</td>
<td align="left">
Three lines.
</td>
<td align="left">
Fixed width.
</td>
<tr>
<td align="left">
3
</td>
<td align="left">
Five lines.
</td>
<td align="left">
Fixed width.
</td>
<tr>
<td align="left">
4
</td>
<td align="left">
Seven lines.
</td>
<td align="left">
Fixed width.
</td>
<tr>
<td align="left">
5
</td>
<td align="left">
Nine lines.
</td>
<td align="left">
Fixed width.
</td>
<tr>
<td align="left">
nic
<br>
nice
</td>
<td align="left">
Curved bonds, conical sticks or cylindrical sticks,
<br>
depending both on the bond probe radius and the atomic
<br>
radii. This bond style is available for the following
<br>
atomic styles: SMALL, SM2, COVALENT, CO2,
<br>
SPACEFILL, SP2, BIG and BI2. Do not combine
<br>
the nice bond style with atomic styles 0, 1, 2, 3,
<br>
4, 5, 6, 7, BALL and BA2.
</td>
<td align="left">
Proportional.
</td>
<tr>
<td align="left">
sti
<br>
sticks
</td>
<td align="left">
Cylindrical sticks. The command BONDS STICKS
<br>
(short form: BON STI) is the most convenient
<br>
way to draw bonds as sticks. Default stick
<br>
radius may be changed by using the command
<br>
STICKS (short form: STI).
</td>
<td align="left">
Proportional.
</td>
</table>
<br>
<font color=#880000>
<b>
NICE BONDS
<br>
</b>
</font>
Nice bonds may be curved or straight, cylindrical or conical, depending on
bond probe radius. If this radius is small (like 0.8 angstroms), the bonds
will be curved. Probe radius of 10 angstroms will give the straight bonds.
If you want to draw the chemical bonds as cylindrical sticks, it is more
convenient to use the command BONDS STICKS. If your atoms are drawn using
different radii, the bonds will appear conical. For more details, read also
the text about the command
<a href="bon.html">
BONDS
</a>
.
<br><br>
<font color=#880000>
<b>
NOTES
<br>
</b>
</font>
(1) Invisible disulfide bonds (style 0) are not treated as hidden -
they are just invisible.
<br><br>
(2) The nice bond style is allowed for ordinary covalent bonds and for
disulfide bonds, but not for hydrogen bonds.
<br><br>
(4) Remember that the nice disulfide bond style works only for the
following atomic styles: SMALL, SM2, COVALENT, CO2, SPACEFILL, SP2,
BIG and BI2.
<br><br>
<font color=#880000>
<b>
RELATED COMMANDS
<br>
</b>
</font>
PRO (PROBE) is used to set the probe radius. ATO (ATOMS) is used to change
the drawing style for atoms. SSB is used to change the bond drawing style for
disulfide bonds. STI (STICKS) is used to change the stick radius. BALLS is
used to set the ball radius.
<br><br>
<hr size="3">
</html>
|
