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<html>
<head>
<title>
Garlic Tutorial
</title>
</head>
<h1 align=center>
Garlic Tutorial
</h1>
<hr size="3">
<font size="-1" color=RED>
garlic,
free molecular viewer and editor,
free molecular visualization program,
protein structure, DNA structure, PDB,
molecular rendering, biological macromolecule,
Unix, Linux, free software download, open source software,
Damir Zucic.
</font>
<hr size="3">
<h2 align=center>
Lessons
</h2>
These lessons should help you to learn how to use garlic.
Command are given in lowercase, in a short form, but you can use the long
form as well as the uppercase letters. File names should be specified in the
correct case.
<br><br>
RECOMMENDED USAGE: Print lessons.
<br><br>
In addition, you should read the pages describing garlic
<a href="../commands/index.html">
commands
</a>
and
<a href="../controls/index.html">
controls
</a>
!
<br><br>
<a href="lesson1.html">
Lesson 1 - Get familiar with garlic
</a>
<br>
<a href="lesson2.html">
Lesson 2 - Load a small structure
</a>
<br>
<a href="lesson3.html">
Lesson 3 - Playing with two structures
</a>
<br>
<a href="lesson4.html">
Lesson 4 - Drawing styles and color schemes
</a>
<br>
<a href="lesson5.html">
Lesson 5 - How to select atoms
</a>
<br>
<a href="lesson6.html">
Lesson 6 - Ramachandran plot
</a>
<br>
<a href="lesson7.html">
Lesson 7 - Helical wheel plot
</a>
<br>
<a href="lesson8.html">
Lesson 8 - Plot averaged hydrophobicity and hydrophobic moment
</a>
<br>
<a href="lesson9.html">
Lesson 9 - Venn diagram
</a>
<br>
<a href="lesson10.html">
Lesson 10 - Semitransparent plane
</a>
<br>
<a href="lesson11.html">
Lesson 11 - Create small structure
</a>
<br>
<a href="lesson12.html">
Lesson 12 - Replace selected residues
</a>
<br>
<hr size="3">
<h2 align=center>
Scripts
</h2>
The scripts listed below may be used to demonstrate the available drawing
styles for atoms and bonds, as well as some predefined color schemes.
These scripts were included into the garlic source package 28. March 2000.
If you have an older package, copy these scripts to your local host.
How to save the script? Go to the page which contains the script you selected.
Mark and copy the script. Paste it into a local file. Recommended file names:
1: atoms.script,
2: bonds.script,
3: colors.script,
4: dance.script .
<br><br>
<a href="script1.html">
Script 1 - Drawing styles for atoms
</a>
<br>
<a href="script2.html">
Script 2 - Drawing styles for bonds
</a>
<br>
<a href="script3.html">
Script 3 - Predefined (hard-coded) color schemes
</a>
<br>
<a href="script4.html">
Script 4 - Dancing tryptophan
</a>
<br>
<hr size="3">
</html>
|
