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Author: Andreas Tille <tille@debian.org>
Last-Update: Tue, 28 Nov 2017 10:37:22 +0100
Description: Fix spelling issues
--- a/gatb-core/src/gatb/tools/compression/DnaCoder.cpp
+++ b/gatb-core/src/gatb/tools/compression/DnaCoder.cpp
@@ -650,7 +650,7 @@ void DnaEncoder::encodeAnchorRead(int an
//CompressionUtils::encodeNumeric(_rangeEncoder, _isPrevReadAnchorablePosModel, _isPrevReadAnchorablePos);
//}
//_prevAnchorAddress = anchorAddress;
- //printf("anchor adress %i \n",anchorAddress);
+ //printf("anchor address %i \n",anchorAddress);
kmer_type anchor = _kmers[anchorPos];
@@ -1494,7 +1494,7 @@ void DnaDecoder::decodeAnchorRead(){
#ifdef PRINT_DEBUG_DECODER
cout << "\t\t\tRead size: " << _readSize << endl;
cout << "\t\t\tAnchor pos: " << anchorPos << endl;
- cout << "\t\t\tAnchor adress: " << anchorAddress << endl;
+ cout << "\t\t\tAnchor address: " << anchorAddress << endl;
cout << "\t\t\tAnchor: " << anchor.toString(_kmerSize) << endl;
#endif
--- a/gatb-core/src/gatb/tools/compression/Leon.cpp
+++ b/gatb-core/src/gatb/tools/compression/Leon.cpp
@@ -996,7 +996,7 @@ void Leon::endDnaCompression(){
u_int64_t readsSize = _anchorAdressSize+_anchorPosSize+_readSizeSize+_bifurcationSize+_otherSize;
getInfo()->add(2, "Reads", "%.2f (%u)", ((readsSize*100) / (double)_compressedSize), readsSize);
- getInfo()->add(3, "Anchor adress", "%.2f (%u)", ((_anchorAdressSize*100) / (double)_compressedSize), _anchorAdressSize);
+ getInfo()->add(3, "Anchor address", "%.2f (%u)", ((_anchorAdressSize*100) / (double)_compressedSize), _anchorAdressSize);
getInfo()->add(3, "Anchor pos", "%.2f (%u)", ((_anchorPosSize*100) / (double)_compressedSize), _anchorPosSize);
getInfo()->add(3, "Read size", "%.2f (%u)", ((_readSizeSize*100) / (double)_compressedSize), _readSizeSize);
getInfo()->add(3, "Bifurcation", "%.2f (%u)", ((_bifurcationSize*100) / (double)_compressedSize), _bifurcationSize);
--- a/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
+++ b/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
@@ -1276,13 +1276,13 @@ unsigned char GraphUnitigsTemplate<span>
template<size_t span>
void GraphUnitigsTemplate<span>::countNeighbors (const NodeGU &source, size_t &in, size_t &out) const
{
- std::cout << "GraphU countNeighbors source,in,out not implememented" << std::endl;exit(1);
+ std::cout << "GraphU countNeighbors source,in,out not implemented" << std::endl;exit(1);
}
template<size_t span>
NodeGU GraphUnitigsTemplate<span>::getNode (const NodeGU& source, Direction dir, kmer::Nucleotide nt, bool& exists) const
{
- std::cout << "GraphU getNode source,dir,nt,exists not implememented" << std::endl;exit(1);
+ std::cout << "GraphU getNode source,dir,nt,exists not implemented" << std::endl;exit(1);
return NodeGU();
}
@@ -1899,7 +1899,7 @@ debugBuildNode(string startKmer) const
}
}
}
- std::cout << "could not build node correspoding to kmer" << startKmer << ", it's not an unitig end." << std::endl;
+ std::cout << "could not build node corresponding to kmer" << startKmer << ", it's not an unitig end." << std::endl;
exit(1);
}
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