File: gbrowse_syn_load_alignment_database.1

package info (click to toggle)
gbrowse 2.56%2Bdfsg-12
  • links: PTS, VCS
  • area: main
  • in suites: trixie
  • size: 13,160 kB
  • sloc: perl: 50,766; javascript: 15,890; sh: 227; sql: 62; makefile: 50; ansic: 27
file content (13 lines) | stat: -rw-r--r-- 693 bytes parent folder | download | duplicates (7) 
1
2
3
4
5
6
7
8
9
10
11
12
13
 
.TH GBrowse2 1  "October 18, 2011" "version 1.1.0" "USER COMMANDS"

.SH NAME
gbrowse_syn_load_alignment_database \- Script to load the database for gbrowse_syn
.SH DESCRIPTION
 The expected file format is tab-delimited (shown below):
 species1  ref1  start1 end1 strand1  cigar_string1 species2  ref2  start2 end2 strand2  cigar_string2 coords1... | coords2...
 the coordinate format: pos1_species1 pos1_species2 ... posn_species1 posn_species2 | pos1_species2 pos1_species1 ... posn_species2 posn_species1,
 where pos is the matching sequence coordinate (ungapped) in each species.
.PP
.SH AUTHOR
Olivier Sallou (olivier.sallou (at) irisa.fr) - Man page and packaging
Lincoln Stein - GBrowse