File: elegans_core.gff3

package info (click to toggle)
gbrowse 2.56%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 13,112 kB
  • ctags: 4,436
  • sloc: perl: 50,765; sh: 249; sql: 62; makefile: 45; ansic: 27
file content (169 lines) | stat: -rw-r--r-- 13,522 bytes parent folder | download | duplicates (7)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
##gff-version 3
#source gbrowse GFFDumper plugin
C01F4	sequenced	contig	1	40000	.	+	.	Name=C01F4
C01F4	curated	gene	27922	33389	.	-	.	ID=flt-1;Name=flt-1
C01F4	curated	mRNA	27922	33389	.	-	.	ID=ZK783.4t;Name=ZK783.4t;Parent=flt-1
C01F4	curated	three_prime_UTR	27922	28169	.	-	.	Parent=ZK783.4t
C01F4	curated	CDS	28170	28350	.	-	1	Parent=ZK783.4t
C01F4	curated	CDS	28647	29248	.	-	0	Parent=ZK783.4t
C01F4	curated	CDS	29518	29739	.	-	0	Parent=ZK783.4t
C01F4	curated	CDS	29782	30193	.	-	1	Parent=ZK783.4t
C01F4	curated	CDS	30325	31260	.	-	1	Parent=ZK783.4t
C01F4	curated	CDS	31308	31446	.	-	2	Parent=ZK783.4t
C01F4	curated	CDS	31495	32014	.	-	0	Parent=ZK783.4t
C01F4	curated	CDS	32190	32564	.	-	0	Parent=ZK783.4t
C01F4	curated	CDS	32617	33360	.	-	0	Parent=ZK783.4t
C01F4	curated	five_prime_UTR	33361	33389	.	-	.	Parent=ZK783.4t

C01F4	curated	gene	38659	49508	.	+	.	ID=C18H2.1;Name=C18H2.1
C01F4	curated	mRNA	38659	49508	.	+	.	ID=C18H2.1t;Name=C18H2.1t
C01F4	curated	CDS	38659	39007	.	+	0	Parent=C18H2.1t
C01F4	curated	CDS	39553	39673	.	+	2	Parent=C18H2.1t
C01F4	curated	three_prime_UTR	39674	49508	.	+	.	Parent=C18H2.1t

C01F4	curated	gene	3318	18324	.	+	.	ID=ZK783.1;Name=ZK783.1
C01F4	curated	mRNA	3318	18324	.	+	.	ID=ZK783.1t;Parent=ZK783.1;Name=ZK783.1t
C01F4	curated	CDS	3318	3357	.	+	0	Parent=ZK783.1t
C01F4	curated	CDS	3567	3669	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	4151	4257	.	+	1	Parent=ZK783.1t
C01F4	curated	CDS	4308	4645	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	4941	5259	.	+	0	Parent=ZK783.1t
C01F4	curated	CDS	5444	5677	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	5727	6341	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	6460	6516	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	6648	8359	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	8409	8502	.	+	0	Parent=ZK783.1t
C01F4	curated	CDS	8578	9184	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	9245	9366	.	+	1	Parent=ZK783.1t
C01F4	curated	CDS	9564	10493	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	10546	10959	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	11009	11227	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	13670	13828	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	15155	15582	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	15631	15916	.	+	0	Parent=ZK783.1t
C01F4	curated	CDS	15969	16265	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	16334	16524	.	+	2	Parent=ZK783.1t
C01F4	curated	CDS	16575	16631	.	+	0	Parent=ZK783.1t
C01F4	curated	CDS	16683	17039	.	+	0	Parent=ZK783.1t
C01F4	curated	CDS	17162	17219	.	+	0	Parent=ZK783.1t
C01F4	curated	CDS	17657	17670	.	+	2	Parent=ZK783.1t
C01F4	curated	three_prime_UTR	17671	18324	.	+	.	Parent=ZK783.1t

C01F4	curated	gene	18398	20458	.	-	.	ID=ZK783.2;Name=ZK783.2;Note=tyrosine phosphatase
C01F4	curated	mRNA	18398	20458	.	-	.	ID=ZK783.2t;Parent=ZK783.2;Name=ZK783.2t
C01F4	curated	three_prime_UTR	18398	18581	.	-	.	Parent=ZK783.2t
C01F4	curated	CDS	18582	18671	.	-	0	Parent=ZK783.2t
C01F4	curated	CDS	18719	19234	.	-	0	Parent=ZK783.2t
C01F4	curated	CDS	19282	19425	.	-	0	Parent=ZK783.2t
C01F4	curated	CDS	20309	20446	.	-	0	Parent=ZK783.2t
C01F4	curated	five_prime_UTR	20447	20458	.	-	.	Parent=ZK783.2t

C01F4	curated	gene	24507	25426	.	-	.	ID=ZK783.3;Name=ZK783.3
C01F4	curated	mRNA	24507	25426	.	-	.	ID=ZK783.3t;Parent=ZK783.3;Name=ZK783.3t
C01F4	curated	CDS	24507	24543	.	-	1	Parent=ZK783.3t
C01F4	curated	CDS	24590	24686	.	-	2	Parent=ZK783.3t
C01F4	curated	CDS	24737	25034	.	-	0	Parent=ZK783.3t
C01F4	curated	CDS	25086	25176	.	-	1	Parent=ZK783.3t
C01F4	curated	CDS	25314	25426	.	-	0	Parent=ZK783.3t

C01F4	curated	gene	23531	24341	.	-	.	ID=ZK783.5;Name=ZK783.5
C01F4	curated	mRNA	23531	24341	.	-	.	ID=ZK783.5t;Parent=ZK783.5;Name=ZK783.5t
C01F4	curated	CDS	23531	23647	.	-	0	Parent=ZK783.5t
C01F4	curated	CDS	23694	23795	.	-	0	Parent=ZK783.5t
C01F4	curated	CDS	23841	24044	.	-	0	Parent=ZK783.5t
C01F4	curated	CDS	24090	24341	.	-	0	Parent=ZK783.5t

C01F4	BLAT_EST_BEST	EST_match	19016	19234	98.2	-	.	ID=CEESL20R;Name=CEESL20R;Target=CEESL20R 281 63
C01F4	BLAT_EST_BEST	EST_match	19282	19343	98.2	-	.	ID=CEESL20R;Name=CEESL20R;Target=CEESL20R 62 1
C01F4	BLAT_EST_BEST	EST_match	18057	18372	.	-	.	ID=CEESR56F;Name=CEESR56F;Target=CEESR56F 316 1
C01F4	BLAT_EST_BEST	EST_match	18115	18430	96.3	-	.	ID=CEMSG39F;Name=CEMSG39F;Target=CEMSG39F 316 1
C01F4	BLAT_EST_BEST	EST_match	18066	18114	96.3	-	.	ID=CEMSG39F;Name=CEMSG39F;Target=CEMSG39F 366 318
C01F4	BLAT_EST_BEST	EST_match	18054	18065	96.3	-	.	ID=CEMSG39F;Name=CEMSG39F;Target=CEMSG39F 379 368
C01F4	BLAT_EST_BEST	EST_match	28647	28904	99.1	-	.	ID=CK577334;Name=CK577334;Target=CK577334 258 1
C01F4	BLAT_EST_BEST	EST_match	28181	28350	99.1	-	.	ID=CK577334;Name=CK577334;Target=CK577334 428 259
C01F4	BLAT_EST_BEST	EST_match	30857	31195	.	-	.	ID=yk101b1.5;Name=yk101b1.5;Target=yk101b1.5 339 1
C01F4	BLAT_EST_BEST	EST_match	31063	31074	99.7	+	.	ID=yk1048d09.3;Name=yk1048d09.3;Target=yk1048d09.3 1 12
C01F4	BLAT_EST_BEST	EST_match	31076	31081	99.7	+	.	ID=yk1048d09.3;Name=yk1048d09.3;Target=yk1048d09.3 13 18
C01F4	BLAT_EST_BEST	EST_match	31308	31446	99.7	+	.	ID=yk1048d09.3;Name=yk1048d09.3;Target=yk1048d09.3 197 335
C01F4	BLAT_EST_BEST	EST_match	31084	31260	99.7	+	.	ID=yk1048d09.3;Name=yk1048d09.3;Target=yk1048d09.3 20 196
C01F4	BLAT_EST_BEST	EST_match	31495	31793	99.7	+	.	ID=yk1048d09.3;Name=yk1048d09.3;Target=yk1048d09.3 336 634
C01F4	BLAT_EST_BEST	EST_match	32805	33389	.	-	.	ID=yk1048d09.5;Name=yk1048d09.5;Target=yk1048d09.5 600 16
C01F4	BLAT_EST_BEST	EST_match	18398	18427	99.4	+	.	ID=yk1058d12.3;Name=yk1058d12.3;Target=yk1058d12.3 1 30
C01F4	BLAT_EST_BEST	EST_match	18719	19216	99.4	+	.	ID=yk1058d12.3;Name=yk1058d12.3;Target=yk1058d12.3 273 770
C01F4	BLAT_EST_BEST	EST_match	18430	18452	99.4	+	.	ID=yk1058d12.3;Name=yk1058d12.3;Target=yk1058d12.3 32 54
C01F4	BLAT_EST_BEST	EST_match	18454	18671	99.4	+	.	ID=yk1058d12.3;Name=yk1058d12.3;Target=yk1058d12.3 55 272
C01F4	BLAT_EST_BEST	EST_match	19218	19236	99.4	+	.	ID=yk1058d12.3;Name=yk1058d12.3;Target=yk1058d12.3 774 792
C01F4	BLAT_EST_BEST	EST_match	20309	20458	96.7	-	.	ID=yk1058d12.5;Name=yk1058d12.5;Target=yk1058d12.5 171 22
C01F4	BLAT_EST_BEST	EST_match	19282	19425	96.7	-	.	ID=yk1058d12.5;Name=yk1058d12.5;Target=yk1058d12.5 315 172
C01F4	BLAT_EST_BEST	EST_match	18917	19234	96.7	-	.	ID=yk1058d12.5;Name=yk1058d12.5;Target=yk1058d12.5 633 316
C01F4	BLAT_EST_BEST	EST_match	18024	18315	95.3	-	.	ID=yk114b2.3;Name=yk114b2.3;Target=yk114b2.3 300 9
C01F4	BLAT_EST_BEST	EST_match	18318	18324	95.3	-	.	ID=yk114b2.3;Name=yk114b2.3;Target=yk114b2.3 7 1
C01F4	BLAT_EST_BEST	EST_match	11201	11227	98.1	+	.	ID=yk114b2.5;Name=yk114b2.5;Target=yk114b2.5 1 27
C01F4	BLAT_EST_BEST	EST_match	15155	15328	98.1	+	.	ID=yk114b2.5;Name=yk114b2.5;Target=yk114b2.5 187 360
C01F4	BLAT_EST_BEST	EST_match	13670	13828	98.1	+	.	ID=yk114b2.5;Name=yk114b2.5;Target=yk114b2.5 28 186
C01F4	BLAT_EST_BEST	EST_match	27925	27951	99.3	+	.	ID=yk1272b01.3;Name=yk1272b01.3;Target=yk1272b01.3 1 27
C01F4	BLAT_EST_BEST	EST_match	27953	27956	99.3	+	.	ID=yk1272b01.3;Name=yk1272b01.3;Target=yk1272b01.3 28 31
C01F4	BLAT_EST_BEST	EST_match	27958	28350	99.3	+	.	ID=yk1272b01.3;Name=yk1272b01.3;Target=yk1272b01.3 32 424
C01F4	BLAT_EST_BEST	EST_match	28647	28989	99.3	+	.	ID=yk1272b01.3;Name=yk1272b01.3;Target=yk1272b01.3 425 767
C01F4	BLAT_EST_BEST	EST_match	27926	28233	98.2	+	.	ID=yk131b7.3;Name=yk131b7.3;Target=yk131b7.3 1 308
C01F4	BLAT_EST_BEST	EST_match	28234	28258	98.2	+	.	ID=yk131b7.3;Name=yk131b7.3;Target=yk131b7.3 310 334
C01F4	BLAT_EST_BEST	EST_match	31528	31816	.	-	.	ID=yk131b7.5;Name=yk131b7.5;Target=yk131b7.5 289 1
C01F4	BLAT_EST_BEST	EST_match	27973	27977	99.3	+	.	ID=yk177d6.3;Name=yk177d6.3;Target=yk177d6.3 1 5
C01F4	BLAT_EST_BEST	EST_match	27978	28271	99.3	+	.	ID=yk177d6.3;Name=yk177d6.3;Target=yk177d6.3 7 300
C01F4	BLAT_EST_BEST	EST_match	30800	30970	97.9	-	.	ID=yk177d6.5;Name=yk177d6.5;Target=yk177d6.5 171 1
C01F4	BLAT_EST_BEST	EST_match	30732	30799	97.9	-	.	ID=yk177d6.5;Name=yk177d6.5;Target=yk177d6.5 240 173
C01F4	BLAT_EST_BEST	EST_match	10929	10959	97.8	+	.	ID=yk179g5.5;Name=yk179g5.5;Target=yk179g5.5 1 31
C01F4	BLAT_EST_BEST	EST_match	13670	13779	97.8	+	.	ID=yk179g5.5;Name=yk179g5.5;Target=yk179g5.5 251 360
C01F4	BLAT_EST_BEST	EST_match	11009	11227	97.8	+	.	ID=yk179g5.5;Name=yk179g5.5;Target=yk179g5.5 32 250
C01F4	BLAT_EST_BEST	EST_match	18269	18284	98.7	-	.	ID=yk209f3.3;Name=yk209f3.3;Target=yk209f3.3 16 1
C01F4	BLAT_EST_BEST	EST_match	17986	18268	98.7	-	.	ID=yk209f3.3;Name=yk209f3.3;Target=yk209f3.3 300 18
C01F4	BLAT_EST_BEST	EST_match	17362	17367	100	+	.	ID=yk209f3.5;Name=yk209f3.5;Target=yk209f3.5 1 6
C01F4	BLAT_EST_BEST	EST_match	17784	18154	100	+	.	ID=yk209f3.5;Name=yk209f3.5;Target=yk209f3.5 7 377
C01F4	BLAT_EST_BEST	EST_match	10406	10493	98.6	+	.	ID=yk294b3.5;Name=yk294b3.5;Target=yk294b3.5 1 88
C01F4	BLAT_EST_BEST	EST_match	10738	10816	98.6	+	.	ID=yk294b3.5;Name=yk294b3.5;Target=yk294b3.5 282 360
C01F4	BLAT_EST_BEST	EST_match	10546	10737	98.6	+	.	ID=yk294b3.5;Name=yk294b3.5;Target=yk294b3.5 89 280
C01F4	BLAT_EST_BEST	EST_match	27970	27982	99	+	.	ID=yk294e2.3;Name=yk294e2.3;Target=yk294e2.3 1 13
C01F4	BLAT_EST_BEST	EST_match	27983	28268	99	+	.	ID=yk294e2.3;Name=yk294e2.3;Target=yk294e2.3 15 300
C01F4	BLAT_EST_BEST	EST_match	32190	32444	98.3	-	.	ID=yk294e2.5;Name=yk294e2.5;Target=yk294e2.5 306 52
C01F4	BLAT_EST_BEST	EST_match	31961	32014	98.3	-	.	ID=yk294e2.5;Name=yk294e2.5;Target=yk294e2.5 360 307
C01F4	BLAT_EST_BEST	EST_match	32452	32490	98.3	-	.	ID=yk294e2.5;Name=yk294e2.5;Target=yk294e2.5 42 4
C01F4	BLAT_EST_BEST	EST_match	32445	32451	98.3	-	.	ID=yk294e2.5;Name=yk294e2.5;Target=yk294e2.5 50 44
C01F4	BLAT_EST_BEST	EST_match	27973	27977	99	+	.	ID=yk296d1.3;Name=yk296d1.3;Target=yk296d1.3 1 5
C01F4	BLAT_EST_BEST	EST_match	27984	28270	99	+	.	ID=yk296d1.3;Name=yk296d1.3;Target=yk296d1.3 14 300
C01F4	BLAT_EST_BEST	EST_match	27978	27983	99	+	.	ID=yk296d1.3;Name=yk296d1.3;Target=yk296d1.3 7 12
C01F4	BLAT_EST_BEST	EST_match	30557	30916	.	-	.	ID=yk296d1.5;Name=yk296d1.5;Target=yk296d1.5 360 1
C01F4	BLAT_EST_BEST	EST_match	18461	18671	100	+	.	ID=yk304b7.3;Name=yk304b7.3;Target=yk304b7.3 1 211
C01F4	BLAT_EST_BEST	EST_match	18719	18807	100	+	.	ID=yk304b7.3;Name=yk304b7.3;Target=yk304b7.3 212 300
C01F4	BLAT_EST_BEST	EST_match	20309	20410	98.9	-	.	ID=yk304b7.5;Name=yk304b7.5;Target=yk304b7.5 102 1
C01F4	BLAT_EST_BEST	EST_match	19282	19425	98.9	-	.	ID=yk304b7.5;Name=yk304b7.5;Target=yk304b7.5 246 103
C01F4	BLAT_EST_BEST	EST_match	19121	19234	98.9	-	.	ID=yk304b7.5;Name=yk304b7.5;Target=yk304b7.5 360 247
C01F4	BLAT_EST_BEST	EST_match	15876	15881	99.5	+	.	ID=yk319h3.5;Name=yk319h3.5;Target=yk319h3.5 1 6
C01F4	BLAT_EST_BEST	EST_match	16255	16259	99.5	+	.	ID=yk319h3.5;Name=yk319h3.5;Target=yk319h3.5 328 332
C01F4	BLAT_EST_BEST	EST_match	16328	16368	99.5	+	.	ID=yk319h3.5;Name=yk319h3.5;Target=yk319h3.5 333 373
C01F4	BLAT_EST_BEST	EST_match	15969	16254	99.5	+	.	ID=yk319h3.5;Name=yk319h3.5;Target=yk319h3.5 41 326
C01F4	BLAT_EST_BEST	EST_match	15883	15916	99.5	+	.	ID=yk319h3.5;Name=yk319h3.5;Target=yk319h3.5 7 40
C01F4	BLAT_EST_BEST	EST_match	18017	18316	.	-	.	ID=yk323d8.3;Name=yk323d8.3;Target=yk323d8.3 300 1
C01F4	BLAT_EST_BEST	EST_match	15750	15764	99.4	+	.	ID=yk323d8.5;Name=yk323d8.5;Target=yk323d8.5 1 15
C01F4	BLAT_EST_BEST	EST_match	15765	15792	99.4	+	.	ID=yk323d8.5;Name=yk323d8.5;Target=yk323d8.5 17 44
C01F4	BLAT_EST_BEST	EST_match	15969	16159	99.4	+	.	ID=yk323d8.5;Name=yk323d8.5;Target=yk323d8.5 170 360
C01F4	BLAT_EST_BEST	EST_match	15793	15916	99.4	+	.	ID=yk323d8.5;Name=yk323d8.5;Target=yk323d8.5 46 169
C01F4	BLAT_EST_BEST	EST_match	18456	18609	76.7	+	.	ID=yk379c12.3;Name=yk379c12.3;Target=yk379c12.3 1 154
C01F4	BLAT_EST_BEST	EST_match	18611	18671	76.7	+	.	ID=yk379c12.3;Name=yk379c12.3;Target=yk379c12.3 155 215
C01F4	BLAT_EST_BEST	EST_match	18719	18731	76.7	+	.	ID=yk379c12.3;Name=yk379c12.3;Target=yk379c12.3 216 228
C01F4	BLAT_EST_BEST	EST_match	18732	18735	76.7	+	.	ID=yk379c12.3;Name=yk379c12.3;Target=yk379c12.3 230 233
C01F4	BLAT_EST_BEST	EST_match	20309	20387	96.9	-	.	ID=yk379c12.5;Name=yk379c12.5;Target=yk379c12.5 158 80
C01F4	BLAT_EST_BEST	EST_match	19282	19425	96.9	-	.	ID=yk379c12.5;Name=yk379c12.5;Target=yk379c12.5 302 159
C01F4	BLAT_EST_BEST	EST_match	20429	20458	96.9	-	.	ID=yk379c12.5;Name=yk379c12.5;Target=yk379c12.5 36 7
C01F4	BLAT_EST_BEST	EST_match	19154	19234	96.9	-	.	ID=yk379c12.5;Name=yk379c12.5;Target=yk379c12.5 383 303
C01F4	BLAT_EST_BEST	EST_match	20388	20428	96.9	-	.	ID=yk379c12.5;Name=yk379c12.5;Target=yk379c12.5 78 38
C01F4	BLAT_EST_BEST	EST_match	27922	28254	.	+	.	ID=yk53e2.3;Name=yk53e2.3;Target=yk53e2.3 1 333
C01F4	BLAT_EST_BEST	EST_match	28665	29024	.	-	.	ID=yk53e2.5;Name=yk53e2.5;Target=yk53e2.5 360 1
C01F4	BLAT_EST_BEST	EST_match	10118	10477	.	+	.	ID=yk670d9.5;Name=yk670d9.5;Target=yk670d9.5 1 360
C01F4	BLAT_EST_BEST	EST_match	27958	27961	95.8	+	.	ID=yk831d06.3;Name=yk831d06.3;Target=yk831d06.3 30 33
C01F4	BLAT_EST_BEST	EST_match	27963	28350	95.8	+	.	ID=yk831d06.3;Name=yk831d06.3;Target=yk831d06.3 34 421
C01F4	BLAT_EST_BEST	EST_match	28647	28968	95.8	+	.	ID=yk831d06.3;Name=yk831d06.3;Target=yk831d06.3 422 743
C01F4	BLAT_EST_BEST	EST_match	31495	31765	99.8	-	.	ID=yk831d06.5;Name=yk831d06.5;Target=yk831d06.5 271 1
C01F4	BLAT_EST_BEST	EST_match	31308	31446	99.8	-	.	ID=yk831d06.5;Name=yk831d06.5;Target=yk831d06.5 410 272
C01F4	BLAT_EST_BEST	EST_match	31122	31260	99.8	-	.	ID=yk831d06.5;Name=yk831d06.5;Target=yk831d06.5 549 411
C01F4	BLAT_EST_BEST	EST_match	18719	19076	100	-	.	ID=yk838h02.5;Name=yk838h02.5;Target=yk838h02.5 358 1
C01F4	BLAT_EST_BEST	EST_match	18453	18671	100	-	.	ID=yk838h02.5;Name=yk838h02.5;Target=yk838h02.5 577 359