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package Bio::Graphics::Browser::CAlign;
use 5.005;
use Carp;
use vars qw(@ISA @EXPORT @EXPORT_OK);
use strict;
require Exporter;
require DynaLoader;
@ISA = qw(Exporter DynaLoader);
@EXPORT = ();
@EXPORT_OK = qw(align);
bootstrap Bio::Graphics::Browser::CAlign;
sub align {
my $class = shift;
my ($src,$tgt,$matrix) = @_;
return $class->_do_alignment($src,$tgt,$matrix);
}
1;
__END__
=head1 NAME
Bio::Graphics::Browser::CAlign - Compiled helper for Bio::Graphics::Browser::Realign
=head1 SYNOPSIS
No user serviceable parts.
=head1 DESCRIPTION
This module is used internally by Bio::Graphics::Browser::Realign. If
the module is present, the Smith-Waterman alignment will be faster.
Otherwise, Bio::Graphics::Browser::Realign will fall back to a slower
pure-perl implementation.
=head1 SEE ALSO
L<Bio::Graphics::Browser::Realign>
=head1 AUTHOR
Lincoln Stein E<lt>lstein@cshl.orgE<gt>.
Copyright (c) 2003 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
=cut
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