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Source: gbrowse
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Olivier Sallou <osallou@debian.org>,
Charles Plessy <plessy@debian.org>,
Aaron M. Ucko <ucko@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Testsuite: autopkgtest-pkg-perl
Priority: optional
Build-Depends: bioperl,
debhelper-compat (= 13),
dh-apache2,
dh-exec,
apache2-dev,
libbio-graphics-perl,
libbio-coordinate-perl,
libbio-db-seqfeature-perl,
libcapture-tiny-perl,
libcgi-session-perl,
libgd-gd2-perl | libgd-gd2-noxpm-perl,
libio-string-perl,
libjson-perl,
libstatistics-descriptive-perl,
libwww-perl,
libhttp-daemon-perl,
perl,
sqlite3,
libdbd-sqlite3-perl,
libterm-readkey-perl,
libjs-prototype,
libjs-scriptaculous,
libvm-ec2-perl,
libmodule-build-perl,
libcgi-pm-perl,
rename
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/gbrowse
Vcs-Git: https://salsa.debian.org/med-team/gbrowse.git
Homepage: http://gmod.org/wiki/GBrowse
Rules-Requires-Root: no
Package: gbrowse
Architecture: all
Multi-Arch: foreign
Depends: ${misc:Depends},
${perl:Depends},
apache2 | httpd-cgi,
bioperl,
libbio-graphics-perl,
libbio-coordinate-perl,
libbio-db-seqfeature-perl,
libcgi-session-perl,
libgd-gd2-noxpm-perl | libgd-gd2-perl,
libio-string-perl,
libjson-perl,
libstatistics-descriptive-perl,
libwww-perl,
libhttp-daemon-perl,
libterm-readkey-perl,
sqlite3,
libdbd-sqlite3-perl,
libjs-prototype,
libjs-scriptaculous,
libvm-ec2-perl,
lsb-base
Recommends: ${misc:Recommends}
Suggests: gbrowse-data,
gbrowse-calign,
libfile-nfslock-perl
Description: GMOD Generic Genome Browser
Generic Genome Browser is a simple but highly
configurable web-based genome browser. It is a component of the
Generic Model Organism Systems Database project (GMOD).
Some of its features:
* Simultaneous bird's eye and detailed views of the genome;
* Scroll, zoom, center;
* Attach arbitrary URLs to any annotation;
* Order and appearance of tracks are customizable by administrator and
end-user;
* Search by annotation ID, name, or comment;
* Supports third party annotation using GFF formats;
* Settings persist across sessions;
* DNA and GFF dumps;
* Connectivity to different databases, including BioSQL and Chado;
* Multi-language support;
* Third-party feature loading;
* Customizable plug-in architecture (e.g. run BLAST, dump & import many
formats, find oligonucleotides, design primers, create restriction maps,
edit features).
Package: gbrowse-data
Architecture: all
Depends: ${misc:Depends}
Recommends: gbrowse
Description: Sample data to use GBrowse
Generic Genome Browser is a simple but highly
configurable web-based genome browser. It is a component of the
Generic Model Organism Systems Database project (GMOD).
.
This package contains sample data to test the gbrowse tool
with the Yeast genome.
Package: gbrowse-calign
Architecture: any
Depends: ${perl:Depends},
${shlibs:Depends},
${misc:Depends},
gbrowse
Multi-Arch: same
Description: CAlign helper
Generic Genome Browser is a simple but highly
configurable web-based genome browser. It is a component of the
Generic Model Organism Systems Database project (GMOD).
.
This package provides the CAlign helper
for use with Realign. It speeds up Smith-Waterman alignment.
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