1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
|
## Test setup
if(FALSE) {
library("RUnit")
library("gdata")
}
test.mapLevels <- function()
{
## Integer and numeric
checkException(mapLevels(1:3)) # wrong class(x)
checkException(mapLevels(1.5)) # wrong class(x)
## Factor
f <- factor(c("B", "C", "A"))
fMapInt <- list(A=as.integer(1), B=as.integer(2), C=as.integer(3))
fMapInt1 <- list(B=as.integer(1), C=as.integer(2))
fMapCha <- list(A="A", B="B", C="C")
fMapInt <- as.levelsMap(fMapInt)
fMapInt1 <- as.levelsMap(fMapInt1)
fMapCha <- as.levelsMap(fMapCha)
fMapCha1 <- fMapCha[c(1, 3)] # this will test also [.levelsMap
checkIdentical(mapLevels(f), fMapInt)
checkTrue(is.levelsMap(mapLevels(f))) # test for is.levelsMap
checkTrue(is.levelsMap(fMapInt)) # test for as.levelsMap
checkTrue(!gdata:::.isCharacterMap(fMapInt))
checkIdentical(mapLevels(f, sort=FALSE), fMapInt) # sort is not used for factors
checkIdentical(mapLevels(f[1:2], drop=TRUE), fMapInt1)
checkIdentical(mapLevels(f, codes=FALSE), fMapCha)
checkIdentical(mapLevels(f[c(2, 3)], drop=TRUE, codes=FALSE), fMapCha1)
## Character
cha <- c("Z", "M", "A")
chaMapInt <- list(A=as.integer(1), M=as.integer(2), Z=as.integer(3))
chaMapIntO <- list(Z=as.integer(1), M=as.integer(2), A=as.integer(3))
chaMapInt1 <- list(M=as.integer(1), Z=as.integer(2))
chaMapCha <- list(A="A", M="M", Z="Z")
chaMapInt <- as.levelsMap(chaMapInt)
chaMapIntO <- as.levelsMap(chaMapIntO)
chaMapInt1 <- as.levelsMap(chaMapInt1)
chaMapCha <- as.levelsMap(chaMapCha)
checkIdentical(mapLevels(cha), chaMapInt)
checkIdentical(mapLevels(cha, sort=FALSE), chaMapIntO) # sort works for characters
checkIdentical(mapLevels(cha[1:2], drop=TRUE), chaMapInt1)
checkIdentical(mapLevels(cha, codes=FALSE), chaMapCha)
## List
l <- list(f=f, cha=cha)
l1 <- list(cha=cha, f=f)
l2 <- list(cha=cha, f=f, i=1:10)
lMapInt <- list(f=fMapInt, cha=chaMapInt)
lMapCha <- list(f=fMapCha, cha=chaMapCha)
lMapInt <- as.listLevelsMap(lMapInt)
lMapCha <- as.listLevelsMap(lMapCha)
lMapChaC <- as.list(sort(unique(c(cha, as.character(f)))))
lMapChaCO <- as.list(unique(c(cha, as.character(f))))
names(lMapChaC) <- unlist(lMapChaC)
names(lMapChaCO) <- unlist(lMapChaCO)
lMapChaC <- as.levelsMap(lMapChaC)
lMapChaCO <- as.levelsMap(lMapChaCO)
checkIdentical(mapLevels(l), lMapInt)
checkTrue(is.listLevelsMap(mapLevels(l))) # test for is.listLevelsMap
checkTrue(is.listLevelsMap(lMapInt)) # test for as.listLevelsMap
checkIdentical(mapLevels(l, codes=FALSE), lMapCha)
checkException(mapLevels(l, combine=TRUE)) # can not combine integer maps
checkIdentical(mapLevels(l, codes=FALSE, combine=TRUE), lMapChaC)
checkIdentical(mapLevels(l1, codes=FALSE, combine=TRUE), lMapChaC)
checkIdentical(mapLevels(l1, codes=FALSE, combine=TRUE, sort=FALSE), lMapChaCO)
checkException(mapLevels(l2)) # only char and factor
## Data.frame
df <- data.frame(f1=factor(c("G", "Abc", "Abc", "D", "F")),
f2=factor(c("Abc", "Abc", "B", "D", "K")),
cha=c("jkl", "A", "D", "K", "L"),
int=1:5)
dfMapInt <- list(f1=mapLevels(df$f1), f2=mapLevels(df$f2), cha=mapLevels(df$cha))
dfMapInt <- as.listLevelsMap(dfMapInt)
dfMapInt1 <- dfMapInt[c(1, 3)] # this will test also [.listLevelsMap
checkException(mapLevels(df)) # wrong class of int
checkIdentical(mapLevels(df[, 1:3]), dfMapInt)
checkIdentical(mapLevels(df[, c(1, 3)]), dfMapInt1)
}
test.checkLevelsMap <- function(x)
{
## levelsMap
## not a list
checkException(gdata:::.checkLevelsMap(x="A", method="raw"))
## list without names
checkException(gdata:::.checkLevelsMap(x=list("A"), method="raw"))
fMapInt <- list(A=as.integer(1), B=as.integer(2), C=as.integer(3))
## x should be levelsMap
checkException(gdata:::.checkLevelsMap(x=fMapInt, method="class"))
## listLevelsMap
map <- list(as.levelsMap(fMapInt), as.levelsMap(fMapInt))
map1 <- list(fMapInt, fMapInt)
class(map1) <- "listLevelsMap"
## x should be a listLevelsMap
checkException(gdata:::.checkListLevelsMap(x=map, method="class"))
## x should be also a list of levelsMaps
checkException(gdata:::.checkListLevelsMap(x=map1, method="class"))
## the rest is done with levelsMap tests
}
test.cLevelsMap <- function()
{
f1 <- factor(letters[c(2, 1)])
f2 <- factor(letters[c(3, 1, 2)])
mapCha1 <- mapLevels(f1, codes=FALSE) # get maps
mapCha2 <- mapLevels(f2, codes=FALSE)
mapCha1S <- mapLevels(as.character(f1), codes=FALSE, sort=FALSE)
mapCha2S <- mapLevels(as.character(f2), codes=FALSE, sort=FALSE)
mapChaTest <- list(a="a", b="b")
mapChaTest1 <- list(a="a", b="b", c="c")
mapChaTest2 <- list(c="c", a="a", b="b")
class(mapChaTest) <- class(mapChaTest1) <- class(mapChaTest2) <- "levelsMap"
mapChaTest3 <- list(mapChaTest, mapChaTest1, mapChaTest, mapChaTest1)
class(mapChaTest3) <- "listLevelsMap"
checkIdentical(c(mapCha1), mapChaTest)
checkIdentical(c(mapCha2, mapCha1), mapChaTest1)
checkIdentical(c(mapCha2S, mapCha1S, sort=FALSE), mapChaTest2)
l <- list(f1, f2)
mapCha <- mapLevels(l, codes=FALSE)
checkIdentical(c(mapCha, mapCha), mapChaTest3)
checkIdentical(c(mapCha, recursive=TRUE), mapChaTest1)
checkException(c(mapLevels(f1))) # can not combine integer "levelsMaps"
## Example with maps of different length of components
map1 <- list(A=c("a", "e", "i", "o", "u"), B="b", C="c", C="m",
D=c("d", "e"), F="f")
map2 <- list(A=c("a", "z", "w", "y", "x"), F="f", G=c("g", "h", "j"),
i="i", k=c("k", "l"), B="B")
map0Test <- list(A=c("a", "e", "i", "o", "u"), B="b", C="c", C="m",
D=c("d", "e"), F="f",
A=c("z", "w", "y", "x"), G=c("g", "h", "j"),
i="i", k=c("k", "l"), B="B")
map0Test <- as.levelsMap(map0Test)
mapTest <- sort(map0Test)
map1 <- as.levelsMap(map1)
map2 <- as.levelsMap(map2)
map <- c(map1, map2)
map0 <- c(map1, map2, sort=FALSE)
checkIdentical(map, mapTest)
checkIdentical(map0, map0Test)
}
test.uniqueLevelsMap <- function()
{
map <- list(A=c(1, 2, 1, 3), B=4, C=1, C=5, D=c(6, 8), E=7, B=4,
D=c(6, 8))
map1 <- map
map1[[1]] <- map[[1]][c(1, 2, 4)]
map1[[7]] <- NULL # remove B=4
map1[[7]] <- NULL # remove D=c(6, 8)
## unique (used in as.levelsMap), will remove duplicates (A=1)
checkIdentical(as.levelsMap(map1), as.levelsMap(map))
}
"test.mapLevels<-" <- function()
{
## Some errors
checkException("mapLevels<-"(1.1, value=2)) # wrong class(x)
checkException("mapLevels<-"(complex(1.1), value=2)) # wrong class(x)
f <- factor(c("A", "B", "C"))
fMapInt <- mapLevels(f)
## Can not apply integer "levelsMap" to "character"
checkException("mapLevels<-"(as.character(f), value=fMapInt))
fMapCha <- mapLevels(f, codes=FALSE)
## Can not apply character levelsMap to "integer"
checkException("mapLevels<-"(as.integer(f), value=chaMapCha))
fMapFuzz <- fMapInt
fMapFuzz[[1]] <- "A"
## All components of 'value' must be of the same class
checkException("mapLevels<-"(as.character(f), value=fMapFuzz))
checkException("mapLevels<-"(as.integer(f), value=fMapFuzz))
## x integer, value integer levelsMap
f <- factor(letters[c(10, 15, 1, 2)])
fMapInt <- mapLevels(f)
fInt <- as.integer(f)
mapLevels(fInt) <- fMapInt
checkIdentical(fInt, f)
## x factor, value integer levelsMap
fInt <- factor(as.integer(f))
mapLevels(fInt) <- fMapInt
checkIdentical(fInt, f)
## Above is essentially the same as levels<-.factor
fInt1 <- factor(as.integer(f))
levels(fInt1) <- fMapInt
checkIdentical(fInt1, f)
## x character, value character levelsMap
cha <- c("B", "A", "C")
chaMapCha <- as.levelsMap(list(A1="A", B2="B", C3="C"))
mapLevels(cha) <- chaMapCha
chaTest <- factor(c("B2", "A1", "C3"))
checkIdentical(cha, chaTest)
## and a bit more for components of length > 1
cha <- c("G", "I", "B", "A", "C", "D", "Z")
chaMapCha <- as.levelsMap(list(A1=c("A", "G", "I"), B2="B", C3=c("C", "D")))
mapLevels(cha) <- chaMapCha
chaTest <- factor(c("A1", "A1", "B2", "A1", "C3", "C3", NA))
checkIdentical(cha, chaTest)
## x factor, value character levelsMap
f <- factor(c("G", "I", "B", "A", "C", "D", "Z"))
fMapCha <- as.levelsMap(list(A1=c("A", "G", "I"), B2="B", C3=c("C", "D")))
mapLevels(f) <- fMapCha
fTest <- factor(c("A1", "A1", "B2", "A1", "C3", "C3", NA))
checkIdentical(f, fTest)
## Two factors and character map
f1 <- factor(letters[1:10])
f2 <- factor(letters[5:14])
checkIdentical(as.integer(f1), as.integer(f2)) # the same integer codes
mapCha1 <- mapLevels(f1, codes=FALSE) # get maps
mapCha2 <- mapLevels(f2, codes=FALSE)
mapCha <- c(mapCha1, mapCha2) # combine maps
## apply map
mapLevels(f1) <- mapCha # the same as levels(f1) <- mapCha
mapLevels(f2) <- mapCha # the same as levels(f2) <- mapCha
checkIdentical(as.integer(f1), 1:10) # \ internal codes are now
checkIdentical(as.integer(f2), 5:14) # / "consistent" among factors
## The same with list
l <- list(f1=f1, f2=f2)
mapCha <- mapLevels(l, codes=FALSE, combine=TRUE)
mapLevels(l) <- mapCha
checkIdentical(as.integer(l$f1), 1:10) # \ internal codes are now
checkIdentical(as.integer(l$f2), 5:14) # / "consistent" among factors
## and data.frame
df <- data.frame(f1=f1, f2=f2)
mapCha <- mapLevels(df, codes=FALSE, combine=TRUE)
mapLevels(df) <- mapCha
checkIdentical(as.integer(df$f1), 1:10) # \ internal codes are now
checkIdentical(as.integer(df$f2), 5:14) # / "consistent" among factors
}
|
