File: gdcmBaseRootQuery.cxx

package info (click to toggle)
gdcm 2.2.0-14.1
  • links: PTS, VCS
  • area: main
  • in suites: wheezy
  • size: 31,828 kB
  • sloc: cpp: 159,587; ansic: 124,519; xml: 44,180; sh: 7,019; python: 3,618; cs: 1,297; lex: 1,290; java: 1,242; tcl: 677; php: 111; makefile: 108
file content (216 lines) | stat: -rw-r--r-- 6,603 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
/*
file name: gdcmBaseRootQuery.cpp
contains: a baseclass which will produce a dataset for c-find and c-move with patient root
name and date: 18 oct 2010 mmr

This class contains the functionality used in patient c-find and c-move queries.
StudyRootQuery derives from this class.

Namely:
1) list all tags associated with a particular query type
2) produce a query dataset via tag association

Eventually, it can be used to validate a particular dataset type.

The dataset held by this object (or, really, one of its derivates) should be passed to a c-find or c-move query.

*/

#include "gdcmBaseRootQuery.h"
#include "gdcmDataElement.h"
#include "gdcmTag.h"
#include "gdcmDict.h"
#include "gdcmDictEntry.h"
#include "gdcmDicts.h"
#include "gdcmGlobal.h"
#include <limits>
#include "gdcmAttribute.h"
#include "gdcmWriter.h"

namespace gdcm{

BaseRootQuery::BaseRootQuery(){
  //nothing to do, really
}
BaseRootQuery::~BaseRootQuery(){
  //nothing to do, really
}

void BaseRootQuery::SetSearchParameter(const Tag& inTag, const DictEntry& inDictEntry, const std::string& inValue){

  //borrowed this code from anonymization; not sure if it's correct, though.
  DataElement de;
  de.SetTag( inTag );
  const VR &vr = inDictEntry.GetVR();
  if( vr.IsDual() )
    {
    if( vr == VR::US_SS )
      {
      de.SetVR( VR::US );
      }
    else if( vr == VR::US_SS_OW )
      {
      de.SetVR( VR::OW );
      }
    else if( vr == VR::OB_OW )
      {
      de.SetVR( VR::OB );
      }
    }
  else
    {
    de.SetVR( vr );
    }

  std::string thePaddedValue = inValue;
  if (thePaddedValue.length() % 2 ){
    thePaddedValue.push_back(' ');
  }

  assert(thePaddedValue.length() < std::numeric_limits<uint32_t>::max());
  de.SetByteValue(thePaddedValue.c_str(), (uint32_t)thePaddedValue.length());

  //Replace any existing values
  mDataSet.Replace(de);
}

void BaseRootQuery::SetSearchParameter(const Tag& inTag, const std::string& inValue){
  //IF WE WANTED, we could validate the incoming tag as belonging to our set of tags.
  //but we will not.

  static const Global &g = Global::GetInstance();
  static const Dicts &dicts = g.GetDicts();
  static const Dict &pubdict = dicts.GetPublicDict();

  const DictEntry &dictentry = pubdict.GetDictEntry(inTag);

  SetSearchParameter(inTag, dictentry, inValue);

}
void BaseRootQuery::SetSearchParameter(const std::string& inKeyword, const std::string& inValue){

  static const Global &g = Global::GetInstance();
  static const Dicts &dicts = g.GetDicts();
  static const Dict &pubdict = dicts.GetPublicDict();

  Tag theTag;
  const DictEntry &dictentry = pubdict.GetDictEntryByName(inKeyword.c_str(), theTag);
  SetSearchParameter(theTag, dictentry, inValue);
}

const std::ostream &BaseRootQuery::WriteHelpFile(std::ostream &os) {

  //mash all the query types into a vector for ease-of-use
  std::vector<QueryBase*> theQueries;
  std::vector<QueryBase*>::const_iterator qtor;
  theQueries.push_back(&mPatient);
  theQueries.push_back(&mStudy);
  theQueries.push_back(&mSeries);
  theQueries.push_back(&mImage);


  std::vector<Tag> theTags;
  std::vector<Tag>::iterator ttor;


  static const Global &g = Global::GetInstance();
  static const Dicts &dicts = g.GetDicts();
  static const Dict &pubdict = dicts.GetPublicDict();

  os << "The following tags must be supported by a C-FIND/C-MOVE " << mHelpDescription << ": " << std::endl;
  for (qtor = theQueries.begin(); qtor < theQueries.end(); qtor++){
    os << "Level: " << (*qtor)->GetName() << std::endl;
    theTags = (*qtor)->GetRequiredTags(mRootType);
    for (ttor = theTags.begin(); ttor < theTags.end(); ttor++){
      const DictEntry &dictentry = pubdict.GetDictEntry(*ttor);
      os << "Keyword: " << dictentry.GetKeyword() << " Tag: " << *ttor << std::endl;
    }
    os << std::endl;
  }


  os << std::endl;
  os << "The following tags are unique at each level of a " << mHelpDescription << ": " << std::endl;
  for (qtor = theQueries.begin(); qtor < theQueries.end(); qtor++){
    os << "Level: " << (*qtor)->GetName() << std::endl;
    theTags = (*qtor)->GetUniqueTags(mRootType);
    for (ttor = theTags.begin(); ttor < theTags.end(); ttor++){
      const DictEntry &dictentry = pubdict.GetDictEntry(*ttor);
      os << "Keyword: " << dictentry.GetKeyword() << " Tag: " << *ttor << std::endl;
    }
    os << std::endl;
  }


  os << std::endl;
  os << "The following tags are optional at each level of a " << mHelpDescription << ": "  << std::endl;
  for (qtor = theQueries.begin(); qtor < theQueries.end(); qtor++){
    os << "Level: " << (*qtor)->GetName() << std::endl;
    theTags = (*qtor)->GetOptionalTags(mRootType);
    for (ttor = theTags.begin(); ttor < theTags.end(); ttor++){
      const DictEntry &dictentry = pubdict.GetDictEntry(*ttor);
      os << "Keyword: " << dictentry.GetKeyword() << " Tag: " << *ttor << std::endl;
    }
    os << std::endl;
  }

  os << std::endl;

  return os;
}


bool BaseRootQuery::WriteQuery(const std::string& inFileName)
{
  Writer writer;
  writer.SetCheckFileMetaInformation( false );
  writer.GetFile().GetHeader().SetDataSetTransferSyntax(
    TransferSyntax::ImplicitVRLittleEndian );
  writer.GetFile().SetDataSet( GetQueryDataSet() );
  writer.SetFileName( inFileName.c_str() );
  if( !writer.Write() )
    {
      return false;
    }
  return true;
}

DataSet const & BaseRootQuery::GetQueryDataSet() const
{
  return mDataSet;
}

DataSet & BaseRootQuery::GetQueryDataSet()
{
  return mDataSet;
}

void BaseRootQuery::AddQueryDataSet(const DataSet & ds)
{
  // Cannot use std::set::insert in case a unique key was added (eg. 10,20 with an empty
  // value). The user defined value for 10,20 in ds would not be taken into account
  DataSet::ConstIterator it = ds.Begin();
  for( ; it != ds.End(); ++it )
    {
    mDataSet.Replace( *it );
    }
}

}