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/*=========================================================================
Program: GDCM (Grassroots DICOM). A DICOM library
Copyright (c) 2006-2011 Mathieu Malaterre
All rights reserved.
See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notice for more information.
=========================================================================*/
#include "gdcmFileMetaInformation.h"
#include "gdcmAttribute.h"
#include "gdcmVR.h"
#include "gdcmExplicitDataElement.h"
#include "gdcmImplicitDataElement.h"
#include "gdcmByteValue.h"
#include "gdcmSwapper.h"
#include "gdcmException.h"
#include "gdcmTagToType.h"
//#include "gdcmUIDGenerator.h"
#include "gdcmTag.h"
namespace gdcm
{
const char FileMetaInformation::GDCM_FILE_META_INFORMATION_VERSION[] = "\0\1";
const char FileMetaInformation::GDCM_IMPLEMENTATION_CLASS_UID[] = "1.2.826.0.1.3680043.2.1143.107.104.103.115." GDCM_VERSION;
const char FileMetaInformation::GDCM_IMPLEMENTATION_VERSION_NAME[] = "GDCM " GDCM_VERSION;
const char FileMetaInformation::GDCM_SOURCE_APPLICATION_ENTITY_TITLE[] = "GDCM";
// Default initialize those static std::string, with GDCM values:
std::string FileMetaInformation::ImplementationClassUID = GetGDCMImplementationClassUID();
std::string FileMetaInformation::ImplementationVersionName = GetGDCMImplementationVersionName();
std::string FileMetaInformation::SourceApplicationEntityTitle = GetGDCMSourceApplicationEntityTitle();
const char * FileMetaInformation::GetFileMetaInformationVersion()
{
return GDCM_FILE_META_INFORMATION_VERSION;
}
const char * FileMetaInformation::GetGDCMImplementationClassUID()
{
return GDCM_IMPLEMENTATION_CLASS_UID;
}
const char * FileMetaInformation::GetGDCMImplementationVersionName()
{
return GDCM_IMPLEMENTATION_VERSION_NAME;
}
const char * FileMetaInformation::GetGDCMSourceApplicationEntityTitle()
{
return GDCM_SOURCE_APPLICATION_ENTITY_TITLE;
}
void FileMetaInformation::SetImplementationClassUID(const char * imp)
{
// TODO: it would be nice to make sure imp is actually a valid UID
if( imp )
{
ImplementationClassUID = imp;
}
}
void FileMetaInformation::AppendImplementationClassUID(const char * imp)
{
if( imp )
{
ImplementationClassUID = GetGDCMImplementationClassUID();
ImplementationClassUID += ".";
ImplementationClassUID += imp;
}
}
void FileMetaInformation::SetImplementationVersionName(const char * version)
{
if( version )
{
// Simply override the value since we cannot have more than 16bytes...
assert( strlen(version) <= 16 );
//ImplementationVersionName = GetGDCMImplementationVersionName();
//ImplementationVersionName += "-";
//ImplementationVersionName += version;
ImplementationVersionName = version;
}
}
void FileMetaInformation::SetSourceApplicationEntityTitle(const char * title)
{
if( title )
{
//SourceApplicationEntityTitle = GetGDCMSourceApplicationEntityTitle();
//SourceApplicationEntityTitle += "/";
AEComp ae( title );
SourceApplicationEntityTitle = ae.Truncate();
}
}
const char *FileMetaInformation::GetImplementationClassUID()
{
return ImplementationClassUID.c_str();
}
const char *FileMetaInformation::GetImplementationVersionName()
{
return ImplementationVersionName.c_str();
}
const char *FileMetaInformation::GetSourceApplicationEntityTitle()
{
return SourceApplicationEntityTitle.c_str();
}
void FileMetaInformation::FillFromDataSet(DataSet const &ds)
{
// Example: CR-MONO1-10-chest.dcm is missing a file meta header:
DataElement xde;
// File Meta Information Version (0002,0001) -> computed
if( !FindDataElement( Tag(0x0002, 0x0001) ) )
{
xde.SetTag( Tag(0x0002, 0x0001) );
xde.SetVR( VR::OB );
const char *version = FileMetaInformation::GetFileMetaInformationVersion();
xde.SetByteValue( version, 2 /*strlen(version)*/ );
Insert( xde );
}
else
{
const DataElement &de = GetDataElement( Tag(0x0002,0x0001) );
const ByteValue *bv = de.GetByteValue();
if( bv->GetLength() != 2
|| memcmp( bv->GetPointer(), FileMetaInformation::GetFileMetaInformationVersion(), 2 ) != 0 )
{
xde.SetTag( Tag(0x0002, 0x0001) );
xde.SetVR( VR::OB );
const char *version = FileMetaInformation::GetFileMetaInformationVersion();
xde.SetByteValue( version, 2 /*strlen(version)*/ );
Replace( xde );
}
}
// Media Storage SOP Class UID (0002,0002) -> see (0008,0016)
if( !FindDataElement( Tag(0x0002, 0x0002) ) || GetDataElement( Tag(0x0002,0x0002) ).IsEmpty() )
{
if( !ds.FindDataElement( Tag(0x0008, 0x0016) ) || ds.GetDataElement( Tag(0x0008,0x0016) ).IsEmpty() )
{
gdcm::MediaStorage ms;
ms.SetFromModality(ds);
const char *msstr = ms.GetString();
if( msstr )
{
VL::Type strlenMsstr = (VL::Type) strlen(msstr);
xde.SetByteValue( msstr, strlenMsstr );
xde.SetTag( Tag(0x0002, 0x0002) );
{
xde.SetVR( VR::UI );
}
Insert( xde );
}
else
{
gdcmErrorMacro( "Could not find MediaStorage" );
}
}
else
{
const DataElement& msclass = ds.GetDataElement( Tag(0x0008, 0x0016) );
xde = msclass;
xde.SetTag( Tag(0x0002, 0x0002) );
if( msclass.GetVR() == VR::UN || msclass.GetVR() == VR::INVALID )
{
xde.SetVR( VR::UI );
}
Insert( xde );
}
}
else // Ok there is a value in (0002,0002) let see if it match (0008,0016)
{
bool dicomdir = ds.FindDataElement( Tag(0x0004, 0x1220) ); // Directory Record Sequence
(void)dicomdir;
//if( !dicomdir )
{
if( !ds.FindDataElement( Tag(0x0008, 0x0016) ) )
{
// What should I do here ??
gdcmWarningMacro( "Missing SOPClassUID in DataSet but found in FileMeta" );
}
else
{
const DataElement& sopclass = ds.GetDataElement( Tag(0x0008, 0x0016) );
DataElement mssopclass = GetDataElement( Tag(0x0002, 0x0002) );
assert( !mssopclass.IsEmpty() );
const ByteValue *bv = sopclass.GetByteValue();
if( bv )
{
mssopclass.SetByteValue( bv->GetPointer(), bv->GetLength() );
}
else
{
throw gdcm::Exception( "SOP Class is empty sorry" );
}
Replace( mssopclass );
}
}
}
// Media Storage SOP Instance UID (0002,0003) -> see (0008,0018)
const DataElement &dummy = GetDataElement(Tag(0x0002,0x0003)); (void)dummy;
if( !FindDataElement( Tag(0x0002, 0x0003) ) || GetDataElement( Tag(0x0002,0x0003) ).IsEmpty() )
{
if( ds.FindDataElement( Tag(0x0008, 0x0018) ) )
{
const DataElement& msinst = ds.GetDataElement( Tag(0x0008, 0x0018) );
if( msinst.IsEmpty() )
{
// Ok there is nothing...
//UIDGenerator uid;
//const char *s = uid.Generate();
//xde.SetByteValue( s, strlen(s) );
// FIXME somebody before should make sure there is something...
xde = msinst;
}
else
{
xde = msinst;
}
xde.SetTag( Tag(0x0002, 0x0003) );
if( msinst.GetVR() == VR::UN || msinst.GetVR() == VR::INVALID )
{
xde.SetVR( VR::UI );
}
Replace( xde );
}
else
{
//assert(0);
throw gdcm::Exception( "No 2,3 and 8,18 element sorry" );
}
}
else // Ok there is a value in (0002,0003) let see if it match (0008,0018)
{
bool dirrecsq = ds.FindDataElement( Tag(0x0004, 0x1220) ); // Directory Record Sequence
MediaStorage ms;
ms.SetFromHeader( *this );
bool dicomdir = (ms == MediaStorage::MediaStorageDirectoryStorage && dirrecsq);
if( !dicomdir )
{
if( !ds.FindDataElement( Tag(0x0008, 0x0018) ) || ds.GetDataElement( Tag(0x0008, 0x0018) ).IsEmpty() )
{
throw gdcm::Exception( "No 8,18 element sorry" );
//assert(0);
}
const DataElement& sopinst = ds.GetDataElement( Tag(0x0008, 0x0018) );
//const DataElement & foo = GetDataElement( Tag(0x0002, 0x0003) );
assert( !GetDataElement( Tag(0x0002, 0x0003) ).IsEmpty() );
DataElement mssopinst = GetDataElement( Tag(0x0002, 0x0003) );
const ByteValue *bv = sopinst.GetByteValue();
assert( bv );
mssopinst.SetByteValue( bv->GetPointer(), bv->GetLength() );
Replace( mssopinst );
}
}
//assert( !GetDataElement( Tag(0x0002,0x0003) ).IsEmpty() );
// Transfer Syntax UID (0002,0010) -> ??? (computed at write time at most)
if( FindDataElement( Tag(0x0002, 0x0010) ) && !GetDataElement( Tag(0x0002,0x0010) ).IsEmpty() )
{
DataElement tsuid = GetDataElement( Tag(0x0002, 0x0010) );
const char * datasetts = DataSetTS.GetString();
const ByteValue * bv = tsuid.GetByteValue();
assert( bv );
std::string currentts( bv->GetPointer(), bv->GetPointer() + bv->GetLength() );
if( strlen(currentts.c_str()) != strlen(datasetts)
|| strcmp( currentts.c_str(), datasetts ) != 0 )
{
xde = tsuid;
VL::Type strlenDatasetts = (VL::Type) strlen(datasetts);
xde.SetByteValue( datasetts, strlenDatasetts );
Replace( xde );
}
if( tsuid.GetVR() != VR::UI )
{
xde = tsuid;
xde.SetVR( VR::UI );
Replace( xde );
}
}
else
{
// Very bad !!
//throw Exception( "No (0002,0010) element found" );
// Constuct it from DataSetTS
if( DataSetTS == TransferSyntax::TS_END )
{
throw gdcm::Exception( "No TransferSyntax specified." );
}
const char* str = TransferSyntax::GetTSString(DataSetTS);
VL::Type strlenStr = (VL::Type) strlen(str);
xde.SetByteValue( str, strlenStr );
xde.SetVR( VR::UI );
xde.SetTag( Tag(0x0002,0x0010) );
Insert( xde );
}
// Implementation Class UID (0002,0012) -> ??
if( !FindDataElement( Tag(0x0002, 0x0012) ) )
{
xde.SetTag( Tag(0x0002, 0x0012) );
xde.SetVR( VR::UI );
//const char implementation[] = GDCM_IMPLEMENTATION_CLASS_UID;
const char *implementation = FileMetaInformation::GetImplementationClassUID();
VL::Type strlenImplementation = (VL::Type) strlen(implementation);
xde.SetByteValue( implementation, strlenImplementation );
Insert( xde );
}
else
{
// TODO: Need to check Implementation UID is actually a valid UID...
//const DataElement& impuid = GetDataElement( Tag(0x0002, 0x0012) );
//const ByteValue *bv = impuid.GetByteValue();
//assert( bv );
//std::string copy( bv->GetPointer(), bv->GetLength() );
//if( !UIDGenerator::IsValid( copy.c_str() ) )
// {
//const char *implementation = FileMetaInformation::GetImplementationClassUID();
//impuid.SetByteValue( implementation, strlen(implementation) );
// }
}
// Implementation Version Name (0002,0013) -> ??
if( !FindDataElement( Tag(0x0002, 0x0013) ) )
{
xde.SetTag( Tag(0x0002, 0x0013) );
xde.SetVR( VR::SH );
//const char version[] = GDCM_IMPLEMENTATION_VERSION_NAME;
SHComp version = FileMetaInformation::GetImplementationVersionName();
VL::Type strlenVersion = (VL::Type)strlen(version);
xde.SetByteValue( version, strlenVersion );
Insert( xde );
}
// Source Application Entity Title (0002,0016) -> ??
if( !FindDataElement( Tag(0x0002, 0x0016) ) )
{
xde.SetTag( Tag(0x0002, 0x0016) );
xde.SetVR( VR::AE );
//const char title[] = GDCM_SOURCE_APPLICATION_ENTITY_TITLE;
const char *title = FileMetaInformation::GetSourceApplicationEntityTitle();
VL::Type strlenTitle = (VL::Type)strlen(title);
xde.SetByteValue( title, strlenTitle );
Insert( xde );
}
// Do this one last !
// (Meta) Group Length (0002,0000) -> computed
Attribute<0x0002, 0x0000> filemetagrouplength;
Remove( filemetagrouplength.GetTag() );
unsigned int glen = GetLength<ExplicitDataElement>();
assert( (glen % 2) == 0 );
filemetagrouplength.SetValue( glen );
Insert( filemetagrouplength.GetAsDataElement() );
assert( !IsEmpty() );
}
// FIXME
// This code should clearly be rewritten with some template meta programing to
// enable reuse of code...
//
// \postcondition after the file meta information (well before the dataset...)
template <typename TSwap>
bool ReadExplicitDataElement(std::istream &is, ExplicitDataElement &de)
{
// Read Tag
std::streampos start = is.tellg();
//std::cout << "Start: " << start << std::endl;
Tag t;
if( !t.template Read<TSwap>(is) )
{
assert(0 && "Should not happen" );
return false;
}
//std::cout << "Tag: " << t << std::endl;
if( t.GetGroup() != 0x0002 )
{
//gdcmDebugMacro( "Done reading File Meta Information" );
std::streampos currentpos = is.tellg();
// old code was fseeking from the beginning of file
// which seems to be quite different than fseeking in reverse from
// the current position... ???
//is.seekg( start, std::ios::beg );
assert( (start - currentpos) <= 0);
assert( (int)(start - currentpos) == -4 );
is.seekg( (start - currentpos), std::ios::cur );
return false;
}
// Read VR
VR vr;
if( !vr.Read(is) )
{
is.seekg( start, std::ios::beg );
return false;
}
//std::cout << "VR : " << vr << std::endl;
// Read Value Length
VL vl;
if( vr & VR::VL32 )
{
if( !vl.template Read<TSwap>(is) )
{
assert(0 && "Should not happen");
return false;
}
}
else
{
// Value Length is stored on 16bits only
vl.template Read16<TSwap>(is);
}
//gdcmDebugMacro( "VL : " << vl );
// Read the Value
ByteValue *bv = NULL;
if( vr == VR::SQ )
{
assert(0 && "Should not happen");
return false;
}
else if( vl.IsUndefined() )
{
assert(0 && "Should not happen");
return false;
}
else
{
bv = new ByteValue;
}
// We have the length we should be able to read the value
bv->SetLength(vl); // perform realloc
if( !bv->template Read<TSwap>(is) )
{
assert(0 && "Should not happen");
return false;
}
//std::cout << "Value : ";
//bv->Print( std::cout );
//std::cout << std::endl;
assert( bv->GetLength() == vl );
de.SetTag(t);
de.SetVR(vr);
de.SetVL(vl);
// FIXME: There should be a way to set the Value to the NULL pointer...
de.SetValue(*bv);
// if( vl == 0 )
// {
// assert( de.IsEmpty() );
// }
return true;
}
template <typename TSwap>
bool ReadImplicitDataElement(std::istream &is, ImplicitDataElement &de)
{
// See PS 3.5, 7.1.3 Data Element Structure With Implicit VR
std::streampos start = is.tellg();
// Read Tag
Tag t;
if( !t.template Read<TSwap>(is) )
{
assert(0 && "Should not happen");
return false;
}
//std::cout << "Tag: " << t << std::endl;
if( t.GetGroup() != 0x0002 )
{
gdcmDebugMacro( "Done reading File Meta Information" );
is.seekg( start, std::ios::beg );
return false;
}
// Read Value Length
VL vl;
if( !vl.template Read<TSwap>(is) )
{
assert(0 && "Should not happen");
return false;
}
ByteValue *bv = 0;
if( vl.IsUndefined() )
{
assert(0 && "Should not happen");
return false;
}
else
{
bv = new ByteValue;
}
// We have the length we should be able to read the value
bv->SetLength(vl); // perform realloc
if( !bv->template Read<TSwap>(is) )
{
assert(0 && "Should not happen");
return false;
}
de.SetTag(t);
de.SetVL(vl);
de.SetValue(*bv);
return true;
}
/*
* Except for the 128 bytes preamble and the 4 bytes prefix, the File Meta
* Information shall be encoded using the Explicit VR Little Endian Transfer
* Syntax (UID=1.2.840.10008.1.2.1) as defined in DICOM PS 3.5.
* Values of each File Meta Element shall be padded when necessary to achieve
* an even length as specified in PS 3.5 by their corresponding Value
* Representation. For compatibility with future versions of this Standard,
* any Tag (0002,xxxx) not defined in Table 7.1-1 shall be ignored.
* Values of all Tags (0002,xxxx) are reserved for use by this Standard and
* later versions of DICOM.
* Note: PS 3.5 specifies that Elements with Tags (0001,xxxx), (0003,xxxx),
* (0005,xxxx), and (0007,xxxx) shall not be used.
*/
/// \TODO FIXME
/// For now I do a Seek back of 6 bytes. It would be better to finish reading
/// the first element of the FMI so that I can read the group length and
/// therefore compare it against the actual value we found...
std::istream &FileMetaInformation::Read(std::istream &is)
{
//ExplicitAttribute<0x0002,0x0000> metagl;
//metagl.Read(is);
// TODO: Can now load data from std::ios::cur to std::ios::cur + metagl.GetValue()
ExplicitDataElement xde;
Tag gl;
gl.Read<SwapperNoOp>(is);
if( gl.GetGroup() != 0x2 ) throw Exception( "INVALID" );
if( gl.GetElement() != 0x0 ) throw Exception( "INVALID" );
VR vr;
vr.Read(is);
if( vr == VR::INVALID ) throw Exception( "INVALID" );
if( vr != VR::UL ) throw Exception( "INVALID" );
// TODO FIXME: I should not do seekg for valid file this is costly
is.seekg(-6,std::ios::cur);
// /opt/ibmcmp/vacpp/9.0/bin/xlC: 1501-230 (S) Internal compiler error; please contact your Service Representative
//#if !defined(__xlC__)
xde.Read<SwapperNoOp>(is);
//#endif
Insert( xde );
// See PS 3.5, Data Element Structure With Explicit VR
while( ReadExplicitDataElement<SwapperNoOp>(is, xde ) )
{
Insert( xde );
}
// Now is a good time to compute the transfer syntax:
ComputeDataSetTransferSyntax();
// we are at the end of the meta file information and before the dataset
return is;
}
std::istream &FileMetaInformation::ReadCompat(std::istream &is)
{
// \precondition
assert( is.good() );
// First off save position in case we fail (no File Meta Information)
// See PS 3.5, Data Element Structure With Explicit VR
if( !IsEmpty() )
{
throw Exception( "Serious bug" );
}
Tag t;
if( !t.Read<SwapperNoOp>(is) )
{
throw Exception( "Cannot read very first tag" );
}
if( t.GetGroup() == 0x0002 )
{
// GE_DLX-8-MONO2-PrivateSyntax.dcm is in Implicit...
return ReadCompatInternal<SwapperNoOp>(is);
}
else if( t.GetGroup() == 0x0008 ) //
{
char vr_str[3];
is.read(vr_str, 2);
vr_str[2] = '\0';
VR::VRType vr = VR::GetVRType(vr_str);
if( vr != VR::VR_END )
{
// File start with a 0x0008 element but no FileMetaInfo and is Explicit
DataSetTS = TransferSyntax::ExplicitVRLittleEndian;
}
else
{
// File start with a 0x0008 element but no FileMetaInfo and is Implicit
DataSetTS = TransferSyntax::ImplicitVRLittleEndian;
}
is.seekg(-6, std::ios::cur); // Seek back
}
else if( t.GetGroup() == 0x0800 ) // Good ol' ACR NEMA
{
char vr_str[3];
is.read(vr_str, 2);
vr_str[2] = '\0';
VR::VRType vr = VR::GetVRType(vr_str);
if( vr != VR::VR_END )
{
// File start with a 0x0008 element but no FileMetaInfo and is Explicit
DataSetTS = TransferSyntax::ExplicitVRBigEndian;
}
else
{
// File start with a 0x0008 element but no FileMetaInfo and is Implicit
DataSetTS = TransferSyntax::ImplicitVRBigEndianACRNEMA;
}
is.seekg(-6, std::ios::cur); // Seek back
}
else if( t.GetElement() == 0x0010 ) // Hum, is it a private creator ?
{
is.seekg(-4, std::ios::cur); // Seek back
DataSetTS = TransferSyntax::ImplicitVRLittleEndian;
}
else
{
//assert( t.GetElement() == 0x0 );
char vr_str[3];
VR::VRType vr = VR::VR_END;
if( is.read(vr_str, 2) )
{
vr_str[2] = '\0';
vr = VR::GetVRType(vr_str);
}
else
{
throw Exception( "Impossible: cannot read 2bytes for VR" );
}
is.seekg(-6, std::ios::cur); // Seek back
if( vr != VR::VR_END )
{
// Ok we found a VR, this is 99% likely to be our safe bet
if( t.GetGroup() > 0xff || t.GetElement() > 0xff )
DataSetTS = TransferSyntax::ExplicitVRBigEndian;
else
DataSetTS = TransferSyntax::ExplicitVRLittleEndian;
}
else
{
DataElement null( Tag(0x0,0x0), 0);
ImplicitDataElement ide;
ide.ReadPreValue<SwapperNoOp>(is);
if( ide.GetTag() == null.GetTag() && ide.GetVL() == 4 )
{
// This is insane, we are actually reading an attribute with tag (0,0) !
// something like IM-0001-0066.CommandTag00.dcm was crafted
ide.ReadValue<SwapperNoOp>(is);
ReadCompat(is); // this will read the next element
assert( DataSetTS == TransferSyntax::ImplicitVRLittleEndian );
is.seekg(-12, std::ios::cur); // Seek back
return is;
}
// else
throw Exception( "Cannot find DICOM type. Giving up." );
}
}
return is;
}
#define ADDVRIMPLICIT( element ) \
case element: \
de.SetVR( (VR::VRType)TagToType<0x0002,element>::VRType ); \
break;
bool AddVRToDataElement(DataElement &de)
{
switch(de.GetTag().GetElement())
{
ADDVRIMPLICIT(0x0000);
ADDVRIMPLICIT(0x0001);
ADDVRIMPLICIT(0x0002);
ADDVRIMPLICIT(0x0003);
ADDVRIMPLICIT(0x0010);
ADDVRIMPLICIT(0x0012);
ADDVRIMPLICIT(0x0013);
ADDVRIMPLICIT(0x0016);
ADDVRIMPLICIT(0x0100);
ADDVRIMPLICIT(0x0102);
default:
return false;
}
return true;
}
template <typename TSwap>
std::istream &FileMetaInformation::ReadCompatInternal(std::istream &is)
{
//assert( t.GetGroup() == 0x0002 );
// if( t.GetGroup() == 0x0002 )
{
// Purposely not Re-use ReadVR since we can read VR_END
char vr_str[2];
is.read(vr_str, 2);
if( VR::IsValid(vr_str) )
{
MetaInformationTS = TransferSyntax::Explicit;
// Hourah !
// Looks like an Explicit File Meta Information Header.
is.seekg(-6, std::ios::cur); // Seek back
//is.seekg(start, std::ios::beg); // Seek back
//std::streampos dpos = is.tellg();
ExplicitDataElement xde;
while( ReadExplicitDataElement<SwapperNoOp>(is, xde ) )
{
//std::cout << xde << std::endl;
if( xde.GetVR() == VR::UN )
{
gdcmWarningMacro( "VR::UN found in file Meta header. "
"VR::UN will be replaced with proper VR for tag: " << xde.GetTag() );
AddVRToDataElement(xde);
}
Insert( xde );
}
// Now is a good time to find out the dataset transfer syntax
ComputeDataSetTransferSyntax();
}
else
{
MetaInformationTS = TransferSyntax::Implicit;
gdcmWarningMacro( "File Meta Information is implicit. VR will be explicitely added" );
// Ok this might be an implicit encoded Meta File Information header...
// GE_DLX-8-MONO2-PrivateSyntax.dcm
is.seekg(-6, std::ios::cur); // Seek back
ImplicitDataElement ide;
while( ReadImplicitDataElement<SwapperNoOp>(is, ide ) )
{
if( AddVRToDataElement(ide) )
{
Insert(ide);
}
else
{
gdcmWarningMacro( "Unknown element found in Meta Header: " << ide.GetTag() );
}
}
// Now is a good time to find out the dataset transfer syntax
ComputeDataSetTransferSyntax();
}
}
// else
// {
// gdcmDebugMacro( "No File Meta Information. Start with Tag: " << t );
// is.seekg(-4, std::ios::cur); // Seek back
// }
// we are at the end of the meta file information and before the dataset
return is;
}
//void FileMetaInformation::SetTransferSyntaxType(TS const &ts)
//{
// //assert( DS == 0 );
// //InternalTS = ts;
//}
// FIXME: If any boozoo ever write a SQ in the meta header
// we are in bad shape...
void FileMetaInformation::ComputeDataSetTransferSyntax()
{
const Tag t(0x0002,0x0010);
const DataElement &de = GetDataElement(t);
std::string ts;
const ByteValue *bv = de.GetByteValue();
if( !bv )
{
throw Exception( "Unknown Transfer syntax" );
}
// Pad string with a \0
ts = std::string(bv->GetPointer(), bv->GetLength());
TransferSyntax tst(TransferSyntax::GetTSType(ts.c_str()));
if( tst == TransferSyntax::TS_END )
{
throw Exception( "Unknown Transfer syntax" );
}
DataSetTS = tst;
// postcondition
DataSetTS.IsValid();
}
void FileMetaInformation::SetDataSetTransferSyntax(const TransferSyntax &ts)
{
DataSetTS = ts;
}
std::string FileMetaInformation::GetMediaStorageAsString() const
{
// D 0002|0002 [UI] [Media Storage SOP Class UID]
// [1.2.840.10008.5.1.4.1.1.12.1]
// ==> [X-Ray Angiographic Image Storage]
const Tag t(0x0002,0x0002);
if( !FindDataElement( t ) )
{
gdcmDebugMacro( "File Meta information is present but does not"
" contains " << t );
return "";
}
const DataElement &de = GetDataElement(t);
std::string ts;
{
const ByteValue *bv = de.GetByteValue();
assert( bv );
if( bv->GetPointer() && bv->GetLength() )
{
// Pad string with a \0
ts = std::string(bv->GetPointer(), bv->GetLength());
}
}
// Paranoid check: if last character of a VR=UI is space let's pretend this is a \0
if( ts.size() )
{
char &last = ts[ts.size()-1];
if( last == ' ' )
{
gdcmWarningMacro( "Media Storage Class UID: " << ts << " contained a trailing space character" );
last = '\0';
}
}
return ts;
}
MediaStorage FileMetaInformation::GetMediaStorage() const
{
const std::string &ts = GetMediaStorageAsString();
if( ts.empty() ) return MediaStorage::MS_END;
MediaStorage ms = MediaStorage::GetMSType(ts.c_str());
if( ms == MediaStorage::MS_END )
{
gdcmWarningMacro( "Media Storage Class UID: " << ts << " is unknow" );
}
return ms;
}
void FileMetaInformation::Default()
{
}
std::ostream &FileMetaInformation::Write(std::ostream &os) const
{
// if( !IsValid() )
// {
// gdcmErrorMacro( "File is not valid" );
// return os;
// }
P.Write(os);
// if( IsEmpty() )
// {
// std::cerr << "IsEmpty" << std::endl;
// FileMetaInformation fmi;
// fmi.Default();
// //fmi.Write(os);
// IOSerialize<SwapperNoOp>::Write(os,fmi);
// }
// else if( IsValid() )
{
this->DataSet::Write<ExplicitDataElement,SwapperNoOp>(os);
}
// else
// {
// assert(0);
// }
#if 0
// At least make sure to have group length
//if( !DS->FindDataElement( Tag(0x0002, 0x0000) ) )
{
//if( DS->GetNegociatedType() == TransferSyntax::Explicit )
{
ExplicitDataElement xde( Tag(0x0002, 0x0000), 4, VR::UL );
SmartPointer<ByteValue> bv = new ByteValue;
bv->SetLength( 4 );
uint32_t len = DS->GetLength();
Element<VR::UL, VM::VM1> el =
reinterpret_cast< Element<VR::UL, VM::VM1>& > ( len );
std::stringstream ss;
el.Write( ss );
bv->Read( ss );
xde.SetValue( *bv );
// This is the first element, so simply write the element and
// then start writing the remaining of the File Meta Information
xde.Write(os);
}
}
#endif
return os;
}
} // end namespace gdcm
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