1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
|
/*!
\page gdcmgendir Tool to generate a DICOMDIR file from a File-Set.
\section synopsis SYNOPSIS
\verbatim
gdcmgendir [options] file-in file-out
\endverbatim
\section description DESCRIPTION
\section parameters PARAMETERS
\verbatim
file-in DICOM input filename
file-out DICOM output filename
\endverbatim
\section options OPTIONS
\subsection params Parameters
\verbatim
\endverbatim
\subsection options Options
\verbatim
-i --input DICOM filename or directory
-o --output DICOM filename or directory
-r --recursive recursive.
--descriptor descriptor.
--root-uid Root UID.
\endverbatim
\subsection general_options General Options
\verbatim
-h --help
print this help text and exit
-v --version
print version information and exit
-V --verbose
verbose mode (warning+error).
-W --warning
warning mode, print warning information
-E --error
error mode, print error information
-D --debug
debug mode, print debug information
\endverbatim
\subsection environment_variable environment variable
\verbatim
GDCM_ROOT_UID Root UID
\endverbatim
\section usage Typical usage
\section note NOTE
One may have to run some preliminary steps in order to get gdcmgendir to
generate the DICOMDIR file. Namely two steps:
\li Batch renaming of the DICOM filename into something compatible with ISO 9660 filename convention
\li Convert all DICOM file into the Explicit VR Little Endian Uncompressed (1.2.840.10008.1.2.1)
Step 1. can be solved in a numerous way. Eg. on UNIX environment this could
either be solved using the mkisofs command line tool. Filenames should not
contains any extension since the VR CS does not allow for the '.' character.
Only upper case, digit 0-9, the space ' ' and the underscore '_' character are
valid in VR CS, with a maximum of 8 bytes. Another simple tool that can be
handy is 'rename' in conjunction with 'basename'.
Step 2. can simply be achieved using the gdcmconv command line tool:
\verbatim
$ for i in `ls IMG*`; do gdcmconv --raw --force $i /tmp/out/$i; done
\endverbatim
\section see_also SEE ALSO
<b>gdcmconv</b>(1), <b>gdcmanon</b>(1), <b>rename</b>(1), <b>mkisofs</b>(1)
\section copyright COPYRIGHT
Copyright (c) 2006-2011 Mathieu Malaterre
*/
|
