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/*=========================================================================
Program: GDCM (Grassroots DICOM). A DICOM library
Copyright (c) 2006-2011 Mathieu Malaterre
All rights reserved.
See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notice for more information.
=========================================================================*/
#include "gdcmDefs.h"
#include "gdcmTableReader.h"
#include "gdcmMediaStorage.h"
//#include "gdcmGlobal.h"
#include "gdcmTrace.h"
#include "gdcmFile.h"
#include <stdlib.h>
namespace gdcm
{
Defs::Defs()
{
}
Defs::~Defs()
{
}
void Defs::LoadDefaults()
{
// TableReader tr(*this);
// const Global &g = Global::GetInstance();
// const char *filename = g.Locate( "Part3.xml" );
//
// if( filename )
// {
// tr.SetFilename(filename);
// tr.Read();
// }
// else
// {
// gdcmErrorMacro( "Could not find Part3.xml file. Please report" );
// throw Exception( "Impossible" );
// }
}
void Defs::LoadFromFile(const char *filename)
{
assert( filename );
TableReader tr(*this);
tr.SetFilename(filename);
tr.Read();
}
const char *Defs::GetIODNameFromMediaStorage(MediaStorage const &ms)
{
const char *iodname;
switch(ms)
{
case MediaStorage::MediaStorageDirectoryStorage:
iodname = "Basic Directory IOD Modules";
break;
case MediaStorage::MRImageStorage:
iodname = "MR Image IOD Modules";
break;
case MediaStorage::EnhancedMRImageStorage:
iodname = "Enhanced MR Image IOD Modules";
break;
case MediaStorage::CTImageStorage:
iodname = "CT Image IOD Modules";
break;
case MediaStorage::EnhancedCTImageStorage:
iodname = "Enhanced CT Image IOD Modules";
break;
case MediaStorage::ComputedRadiographyImageStorage:
iodname = "CR Image IOD Modules";
break;
case MediaStorage::XRayAngiographicImageStorage:
//case MediaStorage::XRayAngiographicBiPlaneImageStorageRetired: // FIXME ???
iodname = "X Ray Angiographic Image IOD Modules";
break;
case MediaStorage::UltrasoundImageStorageRetired:
case MediaStorage::UltrasoundImageStorage:
iodname = "US Image IOD Modules";
break;
case MediaStorage::UltrasoundMultiFrameImageStorageRetired:
case MediaStorage::UltrasoundMultiFrameImageStorage:
iodname ="US Multi Frame Image IOD Modules";
break;
case MediaStorage::SecondaryCaptureImageStorage:
iodname = "SC Image IOD Modules";
break;
case MediaStorage::XRayRadiofluoroscopingImageStorage:
iodname = "XRF Image IOD Modules";
break;
case MediaStorage::MRSpectroscopyStorage:
iodname = "MR Spectroscopy IOD Modules";
break;
case MediaStorage::NuclearMedicineImageStorageRetired:
case MediaStorage::NuclearMedicineImageStorage:
iodname = "NM Image IOD Modules";
break;
case MediaStorage::MultiframeSingleBitSecondaryCaptureImageStorage:
iodname = "Multi Frame Single Bit SC Image IOD Modules";
break;
case MediaStorage::MultiframeGrayscaleByteSecondaryCaptureImageStorage:
iodname = "Multi Frame Grayscale Byte SC Image IOD Modules";
break;
case MediaStorage::MultiframeGrayscaleWordSecondaryCaptureImageStorage:
iodname = "Multi Frame Grayscale Word SC Image IOD Modules";
break;
case MediaStorage::MultiframeTrueColorSecondaryCaptureImageStorage:
iodname = "Multi Frame True Color SC Image IOD Modules";
break;
case MediaStorage::EncapsulatedPDFStorage:
iodname = "Encapsulated PDF IOD Modules";
break;
case MediaStorage::EncapsulatedCDAStorage:
iodname = "Encapsulated CDA IOD Modules";
break;
case MediaStorage::VLPhotographicImageStorage:
iodname = "VL Photographic Image IOD Modules";
break;
case MediaStorage::SegmentationStorage:
iodname = "Segmentation IOD Modules";
break;
case MediaStorage::RawDataStorage:
iodname = "Raw Data IOD Modules";
break;
case MediaStorage::MammographyCADSR:
iodname = "Mammography CAD SR IOD Modules";
break;
case MediaStorage::VideoEndoscopicImageStorage:
iodname = "Video Endoscopic Image IOD Modules";
break;
case MediaStorage::RTImageStorage:
iodname = "RT Image IOD Modules";
break;
case MediaStorage::RTDoseStorage:
iodname = "RT Dose IOD Modules";
break;
case MediaStorage::RTStructureSetStorage:
iodname = "RT Structure Set IOD Modules";
break;
case MediaStorage::RTPlanStorage:
iodname = "RT Plan IOD Modules";
break;
case MediaStorage::ModalityPerformedProcedureStepSOPClass:
iodname = "Modality Performed Procedure Step IOD Modules";
break;
case MediaStorage::HangingProtocolStorage:
iodname = "Hanging Protocol IOD Modules";
break;
case MediaStorage::KeyObjectSelectionDocument:
iodname = "Key Object Selection Document IOD Modules";
break;
case MediaStorage::ComprehensiveSR:
iodname = "Comprehensive SR IOD Modules";
break;
case MediaStorage::HemodynamicWaveformStorage:
iodname = "Hemodynamic IOD Modules";
break;
case MediaStorage::DigitalIntraoralXrayImageStorageForPresentation:
case MediaStorage::DigitalIntraoralXRayImageStorageForProcessing:
iodname = "Digital Intra Oral X Ray Image IOD Modules";
break;
case MediaStorage::DigitalXRayImageStorageForPresentation:
case MediaStorage::DigitalXRayImageStorageForProcessing:
iodname = "Digital X Ray Image IOD Modules";
break;
case MediaStorage::DigitalMammographyImageStorageForPresentation:
case MediaStorage::DigitalMammographyImageStorageForProcessing:
iodname = "Digital Mammography X Ray Image IOD Modules";
break;
case MediaStorage::GrayscaleSoftcopyPresentationStateStorageSOPClass:
iodname = "Grayscale Softcopy Presentation State IOD Modules";
break;
case MediaStorage::LeadECGWaveformStorage:
iodname = "12 Lead ECG IOD Modules";
break;
case MediaStorage::GeneralECGWaveformStorage:
iodname = "General ECG IOD Modules";
break;
case MediaStorage::AmbulatoryECGWaveformStorage:
iodname = "Ambulatory ECG IOD Modules";
break;
case MediaStorage::BasicVoiceAudioWaveformStorage:
iodname = "Basic Voice Audio IOD Modules";
break;
case MediaStorage::SpacialFiducialsStorage:
iodname = "Spatial Fiducials IOD Modules";
break;
case MediaStorage::BasicTextSR:
iodname = "Basic Text SR IOD Modules";
break;
case MediaStorage::CardiacElectrophysiologyWaveformStorage:
iodname = "Basic Cardiac EP IOD Modules";
break;
case MediaStorage::PETImageStorage:
iodname = "PET Image IOD Modules";
break;
case MediaStorage::EnhancedSR:
iodname = "Enhanced SR IOD Modules";
break;
case MediaStorage::SpacialRegistrationStorage:
iodname = "Spatial Registration IOD Modules";
break;
case MediaStorage::RTIonPlanStorage:
iodname = "RT Ion Plan IOD Modules";
break;
case MediaStorage::XRay3DAngiographicImageStorage:
iodname = "X Ray 3D Angiographic Image IOD Modules";
break;
case MediaStorage::EnhancedXAImageStorage:
iodname = "Enhanced X Ray Angiographic Image IOD Modules";
break;
case MediaStorage::RTIonBeamsTreatmentRecordStorage:
iodname = "RT Ion Beams Treatment Record IOD Modules";
break;
case MediaStorage::RTTreatmentSummaryRecordStorage:
iodname = "RT Treatment Summary Record IOD Modules";
break;
case MediaStorage::VLEndoscopicImageStorage:
iodname = "VL Endoscopic Image IOD Modules";
break;
case MediaStorage::XRayRadiationDoseSR:
iodname = "X Ray Radiation Dose SR IOD Modules";
break;
case MediaStorage::CSANonImageStorage:
iodname = "Siemens Non-image IOD Modules";
break;
case MediaStorage::VLMicroscopicImageStorage:
iodname = "VL Microscopic Image IOD Modules";
break;
default:
iodname = 0;
}
return iodname;
}
const IOD& Defs::GetIODFromFile(const File& file) const
{
MediaStorage ms;
ms.SetFromFile(file); // SetFromDataSet does not handle DICOMDIR
const IODs &iods = GetIODs();
const char *iodname = GetIODNameFromMediaStorage( ms );
if( !iodname )
{
gdcmErrorMacro( "Not implemented: " << ms );
throw "Not Implemented";
}
const IOD &iod = iods.GetIOD( iodname );
return iod;
}
Type Defs::GetTypeFromTag(const File& file, const Tag& tag) const
{
Type ret;
MediaStorage ms;
ms.SetFromFile(file); // SetFromDataSet does not handle DICOMDIR
const IODs &iods = GetIODs();
const Modules &modules = GetModules();
const char *iodname = GetIODNameFromMediaStorage( ms );
if( !iodname )
{
gdcmErrorMacro( "Not implemented: " << ms );
return ret;
}
const IOD &iod = iods.GetIOD( iodname );
const Macros ¯os = GetMacros();
IOD::SizeType niods = iod.GetNumberOfIODs();
// Iterate over each iod entry in order:
for(unsigned int idx = 0; idx < niods; ++idx)
{
const IODEntry &iodentry = iod.GetIODEntry(idx);
const char *ref = iodentry.GetRef();
//Usage::UsageType ut = iodentry.GetUsageType();
const Module &module = modules.GetModule( ref );
if( module.FindModuleEntryInMacros(macros, tag ) )
{
const ModuleEntry &module_entry = module.GetModuleEntryInMacros(macros,tag);
ret = module_entry.GetType();
}
}
return ret;
}
bool Defs::Verify(const File& file) const
{
MediaStorage ms;
ms.SetFromFile(file);
const IODs &iods = GetIODs();
const Modules &modules = GetModules();
const char *iodname = GetIODNameFromMediaStorage( ms );
if( !iodname )
{
gdcmErrorMacro( "Not implemented" );
return false;
}
const IOD &iod = iods.GetIOD( iodname );
//std::cout << iod << std::endl;
//std::cout << iod.GetIODEntry(14) << std::endl;
IOD::SizeType niods = iod.GetNumberOfIODs();
bool v = true;
// Iterate over each iod entry in order:
for(unsigned int idx = 0; idx < niods; ++idx)
{
const IODEntry &iodentry = iod.GetIODEntry(idx);
const char *ref = iodentry.GetRef();
Usage::UsageType ut = iodentry.GetUsageType();
const Module &module = modules.GetModule( ref );
//std::cout << module << std::endl;
v = v && module.Verify( file.GetDataSet(), ut );
}
return v;
}
bool Defs::Verify(const DataSet& ds) const
{
MediaStorage ms;
ms.SetFromDataSet(ds);
const IODs &iods = GetIODs();
const Modules &modules = GetModules();
const char *iodname = GetIODNameFromMediaStorage( ms );
if( !iodname )
{
gdcmErrorMacro( "Not implemented" );
return false;
}
const IOD &iod = iods.GetIOD( iodname );
//std::cout << iod << std::endl;
//std::cout << iod.GetIODEntry(14) << std::endl;
IOD::SizeType niods = iod.GetNumberOfIODs();
bool v = true;
// Iterate over each iod entry in order:
for(unsigned int idx = 0; idx < niods; ++idx)
{
const IODEntry &iodentry = iod.GetIODEntry(idx);
const char *ref = iodentry.GetRef();
Usage::UsageType ut = iodentry.GetUsageType();
const Module &module = modules.GetModule( ref );
//std::cout << module << std::endl;
v = v && module.Verify( ds, ut );
}
return v;
}
} // end namespace gdcm
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