File: gdcmBaseQuery.cxx

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/*=========================================================================
*
*  Copyright NumFOCUS
*
*  Licensed under the Apache License, Version 2.0 (the "License");
*  you may not use this file except in compliance with the License.
*  You may obtain a copy of the License at
*
*         http://www.apache.org/licenses/LICENSE-2.0.txt
*
*  Unless required by applicable law or agreed to in writing, software
*  distributed under the License is distributed on an "AS IS" BASIS,
*  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
*  See the License for the specific language governing permissions and
*  limitations under the License.
*
*=========================================================================*/
/*
contains: a baseclass which will produce a dataset for c-find and c-move with
patient root

This class contains the functionality used in patient c-find and c-move
queries.  StudyRootQuery derives from this class.

Namely:
1) list all tags associated with a particular query type
2) produce a query dataset via tag association

Eventually, it can be used to validate a particular dataset type.

The dataset held by this object (or, really, one of its derivates) should be
passed to a c-find or c-move query.

*/

#include "gdcmBaseQuery.h"
#include "gdcmQueryBase.h"
#include "gdcmDataElement.h"
#include "gdcmTag.h"
#include "gdcmDict.h"
#include "gdcmDictEntry.h"
#include "gdcmDicts.h"
#include "gdcmGlobal.h"
#include "gdcmAttribute.h"
#include "gdcmWriter.h"
#include "gdcmPrinter.h"
#include <limits>

namespace gdcm
{

  BaseQuery::BaseQuery()
  {
    //nothing to do, really
  }
  BaseQuery::~BaseQuery()
  {
    //nothing to do, really
  }

  void BaseQuery::SetSearchParameter(const Tag& inTag, const DictEntry& inDictEntry, const std::string& inValue)
  {
    //borrowed this code from anonymization; not sure if it's correct, though.
    DataElement de;
    de.SetTag( inTag );
    const VR &vr = inDictEntry.GetVR();
    if( vr.IsDual() )
    {
      if( vr == VR::US_SS )
      {
        de.SetVR( VR::US );
      }
      else if( vr == VR::US_OW )
      {
        de.SetVR( VR::OW );
      }
       else if( vr == VR::US_SS_OW )
      {
        de.SetVR( VR::OW );
      }
      else if( vr == VR::OB_OW )
      {
        de.SetVR( VR::OB );
      }
    }
    else
    {
      de.SetVR( vr );
    }

    std::string thePaddedValue = inValue;
    if (thePaddedValue.length() % 2 ){
      thePaddedValue.push_back(' ');
    }

    assert(thePaddedValue.length() < std::numeric_limits<uint32_t>::max());
    de.SetByteValue(thePaddedValue.c_str(), (uint32_t)thePaddedValue.length());

    //Replace any existing values
    mDataSet.Replace(de);
  }

  void BaseQuery::SetSearchParameter(const Tag& inTag, const std::string& inValue){
    //IF WE WANTED, we could validate the incoming tag as belonging to our set of tags.
    //but we will not.

    static const Global &g = Global::GetInstance();
    static const Dicts &dicts = g.GetDicts();
    static const Dict &pubdict = dicts.GetPublicDict();

    const DictEntry &dictentry = pubdict.GetDictEntry(inTag);

    SetSearchParameter(inTag, dictentry, inValue);

  }
  void BaseQuery::SetSearchParameter(const std::string& inKeyword, const std::string& inValue){

    static const Global &g = Global::GetInstance();
    static const Dicts &dicts = g.GetDicts();
    static const Dict &pubdict = dicts.GetPublicDict();

    Tag theTag;
    const DictEntry &dictentry = pubdict.GetDictEntryByName(inKeyword.c_str(), theTag);
    SetSearchParameter(theTag, dictentry, inValue);
  }

  const std::ostream &BaseQuery::WriteHelpFile(std::ostream &os)
  {
    // TODO
    //mash all the query types into a vector for ease-of-use
    //std::vector<QueryBase*> theQueries;
    //std::vector<QueryBase*>::const_iterator qtor;


    //std::vector<Tag> theTags;
    //std::vector<Tag>::iterator ttor;


    //static const Global &g = Global::GetInstance();
    //static const Dicts &dicts = g.GetDicts();
    //static const Dict &pubdict = dicts.GetPublicDict();
    //os << "The following tags must be supported by a C-FIND/C-MOVE " << mHelpDescription << ": " << std::endl;
    //for (qtor = theQueries.begin(); qtor < theQueries.end(); qtor++){
    //  os << "Level: " << (*qtor)->GetName() << std::endl;
    //  theTags = (*qtor)->GetRequiredTags(mRootType);
    //  for (ttor = theTags.begin(); ttor < theTags.end(); ttor++){
    //    const DictEntry &dictentry = pubdict.GetDictEntry(*ttor);
    //    os << "Keyword: " << dictentry.GetKeyword() << " Tag: " << *ttor << std::endl;
    //  }
    //  os << std::endl;
    //}


    //os << std::endl;
    //os << "The following tags are unique at each level of a " << mHelpDescription << ": " << std::endl;
    //for (qtor = theQueries.begin(); qtor < theQueries.end(); qtor++){
    //  os << "Level: " << (*qtor)->GetName() << std::endl;
    //  theTags = (*qtor)->GetUniqueTags(mRootType);
    //  for (ttor = theTags.begin(); ttor < theTags.end(); ttor++){
    //    const DictEntry &dictentry = pubdict.GetDictEntry(*ttor);
    //    os << "Keyword: " << dictentry.GetKeyword() << " Tag: " << *ttor << std::endl;
    //  }
    //  os << std::endl;
    //}


    //os << std::endl;
    //os << "The following tags are optional at each level of a " << mHelpDescription << ": "  << std::endl;
    //for (qtor = theQueries.begin(); qtor < theQueries.end(); qtor++){
    //  os << "Level: " << (*qtor)->GetName() << std::endl;
    //  theTags = (*qtor)->GetOptionalTags(mRootType);
    //  for (ttor = theTags.begin(); ttor < theTags.end(); ttor++){
    //    const DictEntry &dictentry = pubdict.GetDictEntry(*ttor);
    //    os << "Keyword: " << dictentry.GetKeyword() << " Tag: " << *ttor << std::endl;
    //  }
    //  os << std::endl;
    //}

    os << std::endl;

    return os;
  }


  bool BaseQuery::WriteQuery(const std::string& inFileName)
  {
    Writer writer;
    writer.SetCheckFileMetaInformation( false );
    writer.GetFile().GetHeader().SetDataSetTransferSyntax(
      TransferSyntax::ImplicitVRLittleEndian );
    writer.GetFile().SetDataSet( GetQueryDataSet() );
    writer.SetFileName( inFileName.c_str() );
    if( !writer.Write() )
    {
      gdcmWarningMacro( "Could not write: " << inFileName );
      return false;
    }
    return true;
  }

  DataSet const & BaseQuery::GetQueryDataSet() const
  {
    return mDataSet;
  }

  DataSet & BaseQuery::GetQueryDataSet()
  {
    return mDataSet;
  }

  void BaseQuery::AddQueryDataSet(const DataSet & ds)
  {
    // Cannot use std::set::insert in case a unique key was added (eg. 10,20 with an empty
    // value). The user defined value for 10,20 in ds would not be taken into account
    DataSet::ConstIterator it = ds.Begin();
    for( ; it != ds.End(); ++it )
    {
      mDataSet.Replace( *it );
    }
  }

  void 
    BaseQuery::Print(std::ostream &os) const
  {
    UIDs::TSName asuid = GetAbstractSyntaxUID();
    const char *asname = UIDs::GetUIDName( asuid );
    os << "===================== OUTGOING DIMSE MESSAGE ====================" << std::endl;
    os << "Affected SOP Class UID        :" << asname << std::endl;
    os << "======================= END DIMSE MESSAGE =======================" << std::endl;

    os << "Find SCU Request Identifiers:" << std::endl;
    os << "# Dicom-Data-Set" << std::endl;
    os << "# Used TransferSyntax: Unknown Transfer Syntax" << std::endl;
    Printer p;
    p.PrintDataSet( mDataSet, os );
  }

  bool
	BaseQuery::ValidDataSet( const DataSet & dataSetToValid, const DataSet & dataSetReference ) const
	{
	  bool theReturn = true ;
	  DataSet::ConstIterator itor;
	  for (itor = dataSetReference.Begin(); itor != dataSetReference.End(); itor++)
		{
		if ( dataSetToValid.FindDataElement( itor->GetTag() ) )
		  {
		  SmartPointer<SequenceOfItems> pSqi = dataSetToValid.GetDataElement( itor->GetTag() ).GetValueAsSQ();
		  SmartPointer<SequenceOfItems> pSqiRef = pSqi ? itor->GetValueAsSQ() : nullptr ;
		  if ( pSqi && pSqiRef )
			{
			if( pSqi->GetNumberOfItems() < pSqiRef->GetNumberOfItems() )
			  {
			  gdcmErrorMacro( "DataSet to valid has less Items " << pSqi->GetNumberOfItems() << " for sequence : " << itor->GetTag() << " than valid one " << pSqiRef->GetNumberOfItems() );
			  theReturn = false ;
			  break ;
			  }
			SequenceOfItems::SizeType indexOfItem ;
			for ( indexOfItem = 1 ; indexOfItem <= pSqiRef->GetNumberOfItems(); indexOfItem++ )
			  {
			  const Item & currentReferenceItem = pSqiRef->GetItem( indexOfItem );
			  const Item & currentItemToValid = pSqi->GetItem( indexOfItem );
			  // now valid subDataSet
			  theReturn &= ValidDataSet( currentItemToValid.GetNestedDataSet(), currentReferenceItem.GetNestedDataSet() );
			  if ( !theReturn )
				break ;
			  }
			}
		  else // tag is found its not a sequence so it's ok
			theReturn &= true ;
		  }
		else
		  {
		  gdcmErrorMacro( "You must have this tag : " << itor->GetTag() << " in your query dataset. ");
		  theReturn = false ;
		  break ;
		  }
		}
	  return theReturn ;
	}

} // end namespace gdcm