1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
|
# Documentation
# http://www.stack.nl/~dimitri/doxygen
# http://www.stack.nl/~dimitri/doxygen/commands.html#cmdsa
if(GDCM_DOCUMENTATION)
find_package(Doxygen REQUIRED)
if(GDCM_DOXYGEN_NO_FOOTER)
set(GDCM_HTML_FOOTER)
else()
# Otherwise use gdcm/piwik/sf.net footer:
set(GDCM_HTML_FOOTER ${GDCM_SOURCE_DIR}/Utilities/doxygen/footer.html)
endif()
configure_file(
${GDCM_SOURCE_DIR}/Utilities/doxygen/doxyfile.in
${GDCM_BINARY_DIR}/Utilities/doxygen/Doxyfile
)
file(GLOB_RECURSE headerfiles
"${GDCM_SOURCE_DIR}/Source/*.h"
"${GDCM_SOURCE_DIR}/Wrapping/*.h"
"${GDCM_SOURCE_DIR}/Utilities/VTK/*.h"
#"${GDCM_SOURCE_DIR}/Utilities/doxygen/man/*.dox"
)
list(REMOVE_ITEM headerfiles
"${GDCM_SOURCE_DIR}/Source/DataDictionary/gdcmTagKeywords.h"
"${GDCM_SOURCE_DIR}/Source/DataDictionary/gdcmTagToType.h"
)
#message(${headerfiles})
# We are depending only on header files and README.txt but other files
# could be needed for complete dependencies
file(GLOB_RECURSE examplefiles
"${GDCM_SOURCE_DIR}/Examples/*.cxx"
"${GDCM_SOURCE_DIR}/Examples/*.cs"
"${GDCM_SOURCE_DIR}/Examples/*.java"
"${GDCM_SOURCE_DIR}/Examples/*.py"
)
file(GLOB_RECURSE vtkexamplefiles
"${GDCM_SOURCE_DIR}/Utilities/VTK/Examples/*.cxx"
"${GDCM_SOURCE_DIR}/Utilities/VTK/Examples/*.cs"
"${GDCM_SOURCE_DIR}/Utilities/VTK/Examples/*.java"
"${GDCM_SOURCE_DIR}/Utilities/VTK/Examples/*.py"
)
set(DOXYFILE_EXAMPLES)
foreach(file ${examplefiles} ${vtkexamplefiles})
get_filename_component(f ${file} NAME)
set(DOXYFILE_EXAMPLES "${DOXYFILE_EXAMPLES}\n\\example ${f}")
endforeach()
configure_file(
${GDCM_SOURCE_DIR}/Utilities/doxygen/TestsList.txt.in
${GDCM_BINARY_DIR}/Utilities/doxygen/TestsList.txt
@ONLY
)
if(GDCM_MINOR_VERSION MATCHES "[02468]$")
set(GDCM_DOC_PDF_LINK
"http://gdcm.sourceforge.net/${GDCM_MAJOR_VERSION}.${GDCM_MINOR_VERSION}/gdcm-${GDCM_VERSION}.pdf"
)
set(GDCM_DOC_TARBALL_LINK
"http://gdcm.sourceforge.net/${GDCM_MAJOR_VERSION}.${GDCM_MINOR_VERSION}/gdcm-${GDCM_VERSION}-doc.tar.gz"
)
else()
set(GDCM_DOC_PDF_LINK
"http://gdcm.sourceforge.net/gdcm-${GDCM_VERSION}.pdf"
)
set(GDCM_DOC_TARBALL_LINK
"http://gdcm.sourceforge.net/gdcm-${GDCM_VERSION}-doc.tar.gz"
)
endif()
configure_file(
${GDCM_SOURCE_DIR}/Utilities/doxygen/README.txt.in
${GDCM_BINARY_DIR}/Utilities/doxygen/README.txt
@ONLY
)
set(GDCM_DOC_TARBALL
${CMAKE_CURRENT_BINARY_DIR}/gdcm-${GDCM_VERSION}-doc.tar.gz
)
# epstopdf is needed: sudo apt-get install texlive-extra-utils
# pdflatex is needed: sudo apt-get install texlive-latex-extra
add_custom_command(
OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/html/index.html
${CMAKE_CURRENT_BINARY_DIR}/latex/Makefile
# let's create the tarball within the same custom command to avoid complex dep. rules.
${GDCM_DOC_TARBALL}
${CMAKE_CURRENT_BINARY_DIR}/latex/refman.tex # output #1 (fake)
# 1. first thing first let's run doxygen
COMMAND ${DOXYGEN}
ARGS ${GDCM_BINARY_DIR}/Utilities/doxygen/Doxyfile
# 2. tarball gen.
COMMAND ${CMAKE_COMMAND}
ARGS -E tar cfz ${GDCM_DOC_TARBALL} html
DEPENDS ${GDCM_BINARY_DIR}/Utilities/doxygen/Doxyfile
${GDCM_BINARY_DIR}/Utilities/doxygen/README.txt
${GDCM_BINARY_DIR}/Utilities/doxygen/TestsList.txt
${headerfiles}
COMMENT "GDCM: Creating doxygen doc + tarball"
#WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
)
# PDF building part:
# When building latex, we have to run a custom command to produce the pdf file:
if(UNIX AND GDCM_PDF_DOCUMENTATION)
find_program(PDFOPT_EXECUTABLE pdfopt)
find_program(SED_EXECUTABLE sed)
find_package(LATEX REQUIRED)
mark_as_advanced(PDFOPT_EXECUTABLE SED_EXECUTABLE)
# Let's customize the pdf tags a little usind sed:
# Apparently egrep is also needed...
# BAD: there is a circular dependency where refman.tex depend on refman.tex in the sed steps...
# hack our way in anyway by simply removing the dep...
#add_custom_command(
# ${CMAKE_COMMAND} -P ${CMAKE_CURRENT_SOURCE_DIR}/patchtex.cmake
#)
# TODO, foreach(*.tex)
# sed -i -e "/home/mmalaterre/Projects/" ...
string(REPLACE "/" "\\/" sed_gdcm_source_dir ${GDCM_SOURCE_DIR})
#message(${sed_gdcm_source_dir})
add_custom_command(
OUTPUT #${CMAKE_CURRENT_BINARY_DIR}/latex/refman.tex # output #1 (fake)
${CMAKE_CURRENT_BINARY_DIR}/latex/refman.pdf # output #2
# Command #1
COMMAND ${SED_EXECUTABLE}
ARGS -i.tmp -e "'s/]{hyperref}/]{hyperref}\\\\hypersetup{pdftitle={GDCM ${GDCM_VERSION} Reference Manual},pdfauthor={Mathieu Malaterre and co.},pdfsubject={Grassroots DICOM API reference},pdfkeywords={GDCM,DICOM,Network,Query\\/Retrieve,JPEG,Lossless JPEG,JPEG-LS,J2K,JPEG 2000,RLE},pdfpagemode={UseOutlines},bookmarks,bookmarksopen,pdfstartview={FitH},backref,colorlinks,linkcolor={black},citecolor={black},urlcolor={black},baseurl={http:\\/\\/gdcm.sourceforge.net}}\\\\hyperbaseurl{http:\\/\\/gdcm.sourceforge.net}/g'" ${CMAKE_CURRENT_BINARY_DIR}/latex/refman.tex
# Command #2
COMMAND ${SED_EXECUTABLE}
ARGS -i.tmp -e "'s/${sed_gdcm_source_dir}/gdcm/g'" ${CMAKE_CURRENT_BINARY_DIR}/latex/*.tex
# Command #3
COMMAND make
ARGS -C ${CMAKE_CURRENT_BINARY_DIR}/latex
DEPENDS #${CMAKE_CURRENT_BINARY_DIR}/latex/refman.tex
${CMAKE_CURRENT_BINARY_DIR}/latex/Makefile
#${GDCM_DOC_TARBALL}
COMMENT "GDCM: Creating (patched) pdf of documentation"
)
if(PDFOPT_EXECUTABLE)
add_custom_command(
OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/latex/gdcm-${GDCM_VERSION}.pdf
COMMAND ${PDFOPT_EXECUTABLE}
ARGS ${CMAKE_CURRENT_BINARY_DIR}/latex/refman.pdf
${CMAKE_CURRENT_BINARY_DIR}/latex/gdcm-${GDCM_VERSION}.pdf
DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/latex/refman.pdf
COMMENT "GDCM: Creating optimized pdf version of documentation"
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/latex
)
else()
add_custom_command(
OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/latex/gdcm-${GDCM_VERSION}.pdf
COMMAND ${CMAKE_COMMAND} -E copy
ARGS ${CMAKE_CURRENT_BINARY_DIR}/latex/refman.pdf
${CMAKE_CURRENT_BINARY_DIR}/latex/gdcm-${GDCM_VERSION}.pdf
DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/latex/refman.pdf
COMMENT "GDCM: Creating unoptimized pdf version of documentation"
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/latex
)
endif()
# add target to 'ALL'
add_custom_target(GDCMDoxygenPDF
DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/latex/gdcm-${GDCM_VERSION}.pdf
COMMENT "GDCM: Executing GDCMDoxygenPDF"
)
install(FILES
${CMAKE_CURRENT_BINARY_DIR}/latex/gdcm-${GDCM_VERSION}.pdf
DESTINATION ${GDCM_INSTALL_DOC_DIR}
RENAME gdcm-${GDCM_MAJOR_VERSION}.pdf
)
add_dependencies(DoxygenDoc GDCMDoxygenPDF)
else()
# make DoxygenDoc depends on the final tarball thus all file are garantee to be generated
add_custom_target(GDCMDoxygenDoc
DEPENDS ${GDCM_DOC_TARBALL}
COMMENT "GDCM: Executing GDCMDoxygenDoc"
)
add_dependencies(DoxygenDoc GDCMDoxygenDoc)
endif()
# Install html pages:
#install(FILES
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcm2vtk.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcmconv.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcmanon.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcmgendir.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcmdump.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcmimg.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcminfo.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcmpdf.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcmraw.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcmscanner.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcmtar.html
# ${CMAKE_CURRENT_BINARY_DIR}/html/gdcmviewer.html
# DESTINATION ${GDCM_INSTALL_DOC_DIR} COMPONENT DebugDevel
#)
#install(FILES
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcm2vtk.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcm2pnm.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmconv.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmpap3.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmxml.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmanon.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmgendir.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmdump.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmdiff.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmimg.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcminfo.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmpdf.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmraw.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmscu.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmscanner.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmtar.1
# ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmviewer.1
# DESTINATION ${GDCM_INSTALL_MAN_DIR}/man1 COMPONENT DebugDevel
#)
install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/html DESTINATION ${GDCM_INSTALL_DOC_DIR}
PATTERN "*.md5" EXCLUDE
PATTERN "*.dot" EXCLUDE
)
# http://lists.debian.org/debian-italian/2006/12/msg00878.html
# man2txt : man man | col -b | less
if(GDCM_USE_VTK)
# Make this option a hidden option as vtkgdcm/doxygen stuff is a mess (copy/paste
# from paraview). It always rerun -sigh-
if(GDCM_VTK_DOCUMENTATION)
set(BUILD_DOCUMENTATION 1)
endif()
add_subdirectory(vtk)
endif()
endif()
option(GDCM_BUILD_DOCBOOK_MANPAGES "Build man pages from XML docbook ?" ON)
mark_as_advanced(GDCM_BUILD_DOCBOOK_MANPAGES)
if(GDCM_BUILD_DOCBOOK_MANPAGES)
set(MANPAGES_XML
gdcm2pnm
gdcm2vtk
gdcmanon
gdcmclean
gdcmconv
gdcmdiff
gdcmdump
gdcmgendir
gdcmimg
gdcminfo
gdcmpap3
gdcmpdf
gdcmraw
gdcmscanner
gdcmscu
gdcmtar
gdcmviewer
gdcmxml
)
find_package(LibXslt)
# need an XSLT 1.0 processor, use xsltproc, maybe add more implementations later
if(LIBXSLT_XSLTPROC_EXECUTABLE)
set(XSLT_PROCESSOR ${LIBXSLT_XSLTPROC_EXECUTABLE})
# http://docbook.sourceforge.net/release/xsl/current/doc/manpages/man.output.quietly.html
set(XSLT_PROCESSOR_ARG --param man.output.quietly 1 --maxdepth 6000 )
# User can change the behavior at cmake time:
if(NOT DEFINED GDCM_MANPAGES_USE_NONET)
set(GDCM_MANPAGES_USE_NONET FALSE)
# By default I want nonet on Debian (docbook-xsl-ns)
# on fedora you need to install docbook-style-xsl
if(EXISTS /etc/xml/catalog)
# https://cmake.org/pipermail/cmake/2007-May/014317.html
file(READ /etc/xml/catalog xml_catalog_in)
#<rewriteSystem systemIdStartString="http://docbook.sourceforge.net/release/xsl-ns/" rewritePrefix="file:///usr/share/sgml/docbook/xsl-ns-stylesheets-1.78.1"/>
#<rewriteURI uriStartString="http://docbook.sourceforge.net/release/xsl-ns/" rewritePrefix="file:///usr/share/sgml/docbook/xsl-ns-stylesheets-1.78.1"/>
string(REGEX REPLACE "\r?\n" ";" xml_catalog ${xml_catalog_in})
set(DOCBOOK_REWRITE_PREFIX_FOUND FALSE)
foreach(line ${xml_catalog})
string(REGEX MATCH "^.*systemIdStartString=\"http://docbook.sourceforge.net/release/xsl-ns/\".*" out1 ${line})
string(REGEX REPLACE "^.*systemIdStartString=\"http://docbook.sourceforge.net/release/xsl-ns/\".*\"([A-Za-z ]*)\".*" "\\1" output_variable ${line})
if(out1)
message(STATUS "Your docbook install was found here :${output_variable}")
set(DOCBOOK_REWRITE_PREFIX_FOUND TRUE)
endif()
endforeach()
# Need both the catalog and the docbook installation
if(DOCBOOK_REWRITE_PREFIX_FOUND)
set(GDCM_MANPAGES_USE_NONET TRUE)
else()
message(WARNING "Could not find the location of your docbook-xsl-ns installation. Please make sure your internet connection works. Or skip man pages generation: GDCM_BUILD_DOCBOOK_MANPAGES:BOOL=OFF.")
endif()
else()
message(STATUS "Could not find /etc/xml/catalog")
endif()
endif()
if(GDCM_MANPAGES_USE_NONET)
list(APPEND XSLT_PROCESSOR_ARG --nonet)
endif()
else()
find_program(MSXSL_EXECUTABLE
msxsl
)
mark_as_advanced(MSXSL_EXECUTABLE)
if(MSXSL_EXECUTABLE)
set(XSLT_PROCESSOR ${MSXSL_EXECUTABLE})
set(XSLT_PROCESSOR_ARG "-pi")
# msxsl.exe -pi gdcmimg.xml
#
#Error occurred while executing stylesheet 'http://docbook.sourceforge.net/release/xsl-ns/current/manpages/docbook.xsl'.
#
#Code: 0x80004005
#Namespace 'http://exslt.org/common' does not contain any functions.
# -> http://stackoverflow.com/a/16605034/136285 ??
endif()
endif()
if(XSLT_PROCESSOR)
configure_file(version.txt.in
version.txt @ONLY)
foreach(docbook ${MANPAGES_XML})
add_custom_command(
OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/${docbook}.1
COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_SOURCE_DIR}/man/${docbook}.xml ${CMAKE_CURRENT_BINARY_DIR}/${docbook}.xml
COMMAND ${XSLT_PROCESSOR} ${XSLT_PROCESSOR_ARG} ${CMAKE_CURRENT_BINARY_DIR}/${docbook}.xml
DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/man/${docbook}.xml
)
list(APPEND MANPAGES
${CMAKE_CURRENT_BINARY_DIR}/${docbook}.1
)
endforeach()
add_custom_target(DOCBOOK_MANPAGES
ALL
DEPENDS ${MANPAGES}
COMMENT "docbook manpages"
)
install(FILES
${MANPAGES}
DESTINATION ${GDCM_INSTALL_MAN_DIR}/man1 COMPONENT DebugDevel
)
else()
message(WARNING "Cannot build man page from docbook (need an XSL processor)")
endif()
endif() # GDCM_BUILD_DOCBOOK_MANPAGES
|
