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/*=========================================================================
Program: GDCM (Grassroots DICOM). A DICOM library
Copyright (c) 2006-2011 Mathieu Malaterre
All rights reserved.
See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notice for more information.
=========================================================================*/
#include "gdcmTesting.h"
#include "gdcmSurfaceWriter.h"
#include "gdcmSurfaceReader.h"
#include "gdcmFileMetaInformation.h"
#include "gdcmFilename.h"
#include "gdcmSystem.h"
#include "gdcmAttribute.h"
#include <ctime>
namespace gdcm
{
/**
* Test surface reading and writing method.
*/
int TestSurfaceWriter2(const char *subdir, const char* filename)
{
SurfaceReader reader;
reader.SetFileName( filename );
if ( !reader.Read() )
{
int ret = 1;
gdcm::MediaStorage ms;
if( ms.SetFromFile( reader.GetFile() ) )
{
if( ms == gdcm::MediaStorage::SurfaceSegmentationStorage )
{
ret = 0;
}
}
if( !ret )
{
std::cerr << "Failed to read: " << filename << std::endl;
std::cerr << "MediaStorage is: " << ms.GetString() << std::endl;
}
return !ret;
}
// std::cout << "success to read" << std::endl;
if (reader.GetNumberOfSurfaces() < 2)
{
std::cerr << "File with not enough surfaces (min : 2): " << filename << std::endl;
return 1;
}
// Modify data to test other writing/reading way
SmartPointer< Segment > segment = new Segment;
srand( (unsigned int)time(nullptr));
SegmentHelper::BasicCodedEntry processingAlgo("123", "TEST", "Test123");
{
SegmentReader::SegmentVector segments = reader.GetSegments();
Segment::SurfaceVector tmp;
SegmentReader::SegmentVector::iterator itSegments = segments.begin();
SegmentReader::SegmentVector::iterator itEndSegments = segments.end();
for (; itSegments != itEndSegments; itSegments++)
{
tmp = (*itSegments)->GetSurfaces();
Segment::SurfaceVector::iterator itSurfaces = tmp.begin();
Segment::SurfaceVector::iterator itEndSurfaces = tmp.end();
for (; itSurfaces != itEndSurfaces; itSurfaces++)
{
SmartPointer< Surface > surf = *itSurfaces;
surf->SetSurfaceProcessing( true );
surf->SetSurfaceProcessingRatio( 0.42f );
surf->SetSurfaceProcessingDescription( "Test processing" );
surf->SetProcessingAlgorithm( processingAlgo );
if (surf->GetNumberOfVectors() > 0)
surf->SetNumberOfVectors( 42 );
surf->SetSurfaceNumber( rand()%1000 );
segment->AddSurface(surf);
}
}
segment->SetSegmentDescription("Surface test");
// segment.SetSurfaceCount( segment.GetSurfaces().size() );
}
// Create directory first:
std::string tmpdir = Testing::GetTempDirectory( subdir );
if( !System::FileIsDirectory( tmpdir.c_str() ) )
{
System::MakeDirectory( tmpdir.c_str() );
//return 1;
}
std::string outfilename = Testing::GetTempFilename( filename, subdir );
// Write file from content reader
{
SurfaceWriter writer;
writer.SetFileName( outfilename.c_str() );
writer.AddSegment( segment );
// writer.SetNumberOfSurfaces( segment.GetSurfaces().size() );
// Set same header to write file
const FileMetaInformation & header = reader.GetFile().GetHeader();
writer.GetFile().SetHeader( header );
if( !writer.Write() )
{
std::cerr << "Failed to write: " << outfilename << std::endl;
return 1;
}
// std::cout << "success to write" << std::endl;
}
SurfaceReader reader2;
reader2.SetFileName( outfilename.c_str() );
if ( !reader2.Read() )
{
std::cerr << "Failed to read again: " << outfilename << std::endl;
return 1;
}
// std::cout << "success to read again" << std::endl;
SegmentReader::SegmentVector segments2 = reader2.GetSegments();
if ( strcmp(segment->GetSegmentDescription(), segments2[0]->GetSegmentDescription()) != 0)
{
std::cerr << "Find different segment description"<< std::endl;
return 1;
}
Segment::SurfaceVector surfaces2 = segments2[0]->GetSurfaces();
if ( segment->GetSurfaces().size() != surfaces2.size() )
{
std::cerr << "Find different surface count"<< std::endl;
return 1;
}
Segment::SurfaceVector::iterator itSurfaces2 = surfaces2.begin();
Segment::SurfaceVector::iterator itEndSurfaces2 = surfaces2.end();
SegmentHelper::BasicCodedEntry processingAlgo2;
Segment::SurfaceVector surfaces = segment->GetSurfaces();
Segment::SurfaceVector::iterator itSurfaces = surfaces.begin();
Segment::SurfaceVector::iterator itEndSurfaces = surfaces.end();
for (; itSurfaces2 != itEndSurfaces2; itSurfaces2++)
{
SmartPointer< Surface > surf = *itSurfaces2;
if (!surf->GetSurfaceProcessing())
{
std::cerr << "Find different surface processing"<< std::endl;
return 1;
}
if ( 0.41f > surf->GetSurfaceProcessingRatio() || surf->GetSurfaceProcessingRatio() > 0.43f)
{
std::cerr << "Find different surface processing ratio"<< std::endl;
return 1;
}
String<> str;
str = surf->GetSurfaceProcessingDescription();
if (str.Trim() != "Test processing")
{
std::cerr << "Find different surface processing description"<< std::endl;
return 1;
}
processingAlgo2 = surf->GetProcessingAlgorithm();
str = processingAlgo2.CV;
processingAlgo2.CV = str.Trim();
str = processingAlgo2.CSD;
processingAlgo2.CSD = str.Trim();
str = processingAlgo2.CM;
processingAlgo2.CM = str.Trim();
if (processingAlgo2.CV != processingAlgo.CV
|| processingAlgo2.CSD != processingAlgo.CSD
|| processingAlgo2.CM != processingAlgo.CM )
{
std::cerr << "Find different surface processing algorithm"<< std::endl;
return 1;
}
if (itSurfaces != itEndSurfaces)
{
if (surf->GetSurfaceNumber() != (*itSurfaces)->GetSurfaceNumber())
{
std::cerr << "Find different surface number"<< std::endl;
return 1;
}
if (surf->GetNumberOfVectors() > 0)
{
std::cerr << "Find different number of vectors"<< std::endl;
return 1;
}
itSurfaces++;
}
else
{
std::cerr << "Find different surface organization"<< std::endl;
return 1;
}
}
return 0;
}
}
int TestSurfaceWriter2(int argc, char *argv[])
{
if( argc == 2 )
{
const char *filename = argv[1];
return gdcm::TestSurfaceWriter2(argv[0],filename);
}
// else
gdcm::Trace::DebugOff();
gdcm::Trace::WarningOff();
int r = 0, i = 0;
const char *filename;
const char * const *filenames = gdcm::Testing::GetFileNames();
while( (filename = filenames[i]) )
{
r += gdcm::TestSurfaceWriter2(argv[0], filename );
++i;
}
return r;
}
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