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/*=========================================================================
*
* Copyright Insight Software Consortium
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#include "gdcmCompositeNetworkFunctions.h"
#include "gdcmBaseRootQuery.h"
//#include "gdcmDirectory.h"
#include "gdcmScanner.h"
#include "gdcmTesting.h"
#include "gdcmReader.h"
#include "gdcmWriter.h"
#include "gdcmAttribute.h"
#include "gdcmGlobal.h"
#include <iostream>
#include <fstream>
//this should maybe override == ?
bool AreDataSetsEqual(const gdcm::DataSet& ds1, const gdcm::DataSet& ds2){
gdcm::DataSet::ConstIterator it1 = ds1.Begin();
gdcm::DataSet::ConstIterator it2 = ds2.Begin();
const gdcm::DataElement &de1 = *it1;
const gdcm::DataElement &de2 = *it2;
if( de1 == de2 )
{
}
while( it1 != ds1.End() && it2 != ds2.End() && *it1 == *it2 )
{
++it1;
++it2;
}
if( it1 != ds1.End() || it2 != ds2.End() )
{
std::cerr << "Problem with:" << std::endl;
if( it1 != ds1.End() )
{
std::cerr << "ds1: " << *it1 << std::endl;
}
if( it2 != ds2.End() )
{
std::cerr << "ds2: " << *it2 << std::endl;
}
return false;
}
return true;
}
bool checkbl( const char *filename )
{
static const char *blacklist[] = {
"PHILIPS_GDCM12xBug2.dcm", // #3196213
// W: DIMSE Warning: (GDCMSCU,ANY-SCP): DIMSE receiveDataSetInMemory:
// dset->read() Failed (Corrupted data)
"MR_Philips_Intera_No_PrivateSequenceImplicitVR.dcm",
"MR_Philips_Intera_PrivateSequenceImplicitVR.dcm",
"GE_DLX-8-MONO2-PrivateSyntax.dcm", // Implicit VR Big Endian DLX (G.E Private)
"PrivateGEImplicitVRBigEndianTransferSyntax16Bits.dcm", // Implicit VR Big Endian DLX (G.E Private)
// W: DIMSE Warning: (STORESCU,ANY-SCP): sendMessage: unable to convert
// dataset from 'JPEG Lossless, Non-hierarchical, Process 14' transfer
// syntax to 'Big Endian Explicit'
"SignedShortLosslessBug.dcm",
"MR-MONO2-12-shoulder.dcm",
// difficult for now:
"SIEMENS_SOMATOM-12-ACR_NEMA-ZeroLengthUs.acr",
"MR-MONO2-12-an2.acr",
"ExplicitVRforPublicElementsImplicitVRforShadowElements.dcm",
nullptr
};
for( const char **bl = blacklist; *bl; ++bl )
{
const char *res = strstr( filename, *bl );
if( res )
{
return true;
}
}
return false;
}
int TestSCUFunctions(int argc, char *argv[])
{
if( argc < 6 )
{
std::cerr << argv[0] << " aetitle call portno moveReturnPort remote" << std::endl;
return 1;
}
gdcm::Trace::DebugOff();
gdcm::Trace::WarningOff();
std::string aetitle = argv[1]; // the ae title of this computer
std::string call = argv[2]; // the ae title of the server
uint16_t portno = (uint16_t)atoi(argv[3]); // the port of the server
uint16_t moveReturnPort = (uint16_t)atoi(argv[4]); // the port over which return cstore scps are done for cmove
std::string remote = argv[5]; //the ip address of the remote server
std::string tmpdir = gdcm::Testing::GetTempDirectory( "TestSCUFunctions" );
std::string outputDir = tmpdir; //place to where data is returned by cmove
//std::string inputDir = gdcm::Testing::GetDataRoot(); //input collection of data to transfer
bool didItWork = gdcm::CompositeNetworkFunctions::CEcho( remote.c_str(), portno,
aetitle.c_str(), call.c_str() );
if (!didItWork)
{
std::cerr << "Echo failed." << std::endl;
return 1;
}
std::vector<std::string> theFilenames;
const char *filename;
int i = 0;
const char * const *filenames = gdcm::Testing::GetFileNames();
while( (filename = filenames[i]) )
{
theFilenames.emplace_back(filename );
++i;
}
// Fow now lets eliminate invalid candidates:
// - no SOP Class UID
// - no SOP Instance UID
gdcm::Scanner sc;
gdcm::Tag tts(0x0002,0x0010);
gdcm::Tag sopclass(0x8,0x16);
gdcm::Tag sopinstance(0x8,0x18);
sc.AddTag( tts );
sc.AddTag( sopclass );
sc.AddTag( sopinstance );
if( !sc.Scan( theFilenames ) )
{
return 1;
}
std::vector< gdcm::UIComp > validuids;
validuids.emplace_back("1.2.840.10008.1.2" );
validuids.emplace_back("1.2.840.10008.1.2.1" );
//validuids.push_back( "1.2.840.10008.1.2.2" );
// remove any file without SOP Instance UID
for(
gdcm::Directory::FilenamesType::iterator it = theFilenames.begin();
it != theFilenames.end(); )
{
const char *file = it->c_str();
const char* v1 = sc.GetValue(file, sopclass );
const char* v2 = sc.GetValue(file, sopinstance );
const char* v3 = sc.GetValue(file, tts );
gdcm::UIComp v3uid;
if ( v3 ) v3uid = v3;
std::vector< gdcm::UIComp >::const_iterator it2 = std::find( validuids.begin(),
validuids.end(), v3uid );
if( !v1 || !v2 || !*v1 || !*v2 ) it = theFilenames.erase( it );
else if( checkbl( file ) ) it = theFilenames.erase( it );
else if( v3 && it2 == validuids.end() )
{
//std::cerr << "erase: " << *it << " [" << v3uid << "]" << std::endl;
it = theFilenames.erase( it );
}
else ++it;
}
//store the datasets remotely
didItWork = gdcm::CompositeNetworkFunctions::CStore(remote.c_str(), portno, theFilenames,
aetitle.c_str(), call.c_str());
if (!didItWork)
{
std::cerr << "Store failed." << std::endl;
return 1;
}
std::vector<std::string>::iterator fitor;
for (fitor = theFilenames.begin(); fitor < theFilenames.end(); ++fitor)
{
//read in the file
gdcm::Reader theReader;
theReader.SetFileName(fitor->c_str());
if (!theReader.Read())
{
std::cerr << "Test failed, dicom file " << *fitor << " failed to load." <<std::endl;
return 1;
}
gdcm::File theFile = theReader.GetFile();
gdcm::DataSet ds = theFile.GetDataSet();
//have to construct a query from the dataset.
//grab tag 10,10, use that to get 10,20
//set the query just to be the first character and * after that.
std::vector<std::pair<gdcm::Tag, std::string> > keys;
gdcm::Tag theTag(0x0010, 0x0010);
gdcm::Tag theIDTag(0x0010, 0x0020);
if (ds.FindDataElement(theTag))
{
gdcm::DataElement de = ds.GetDataElement(theTag);
const gdcm::ByteValue* bv = de.GetByteValue();
int theBufferLen = bv->GetLength();
if (theBufferLen < 2) continue;
char* theBuf = new char[theBufferLen];
bv->GetBuffer(theBuf, theBufferLen);
gdcm::UIComp theSearchStringRaw(theBuf, theBufferLen/2);
delete [] theBuf;
// HACK:
std::string theSearchString = theSearchStringRaw.Trim();
std::replace( theSearchString.begin(), theSearchString.end(), ' ', '?');
theSearchString += "*";
std::cerr << "search for: [" << theSearchString << "]" << std::endl;
if (theSearchString.size() %2 == 1)
{
theSearchString += " "; //to make sure everything is double spaced
}
keys.emplace_back(theTag, theSearchString);
}
else
{
continue;
}
std::string theEmptyString;
keys.emplace_back(theIDTag, theEmptyString);
gdcm::BaseRootQuery *theQuery =
gdcm::CompositeNetworkFunctions::ConstructQuery(gdcm::ePatientRootType, gdcm::ePatient, keys);
std::vector<gdcm::DataSet> theDataSets;
bool b = gdcm::CompositeNetworkFunctions::CFind(remote.c_str(), portno, theQuery, theDataSets, aetitle.c_str(), call.c_str());
//std::cout << theQuery->GetQueryDataSet() << std::endl;
delete theQuery;
if( !b )
{
std::cerr << "Problem in CFind" << std::endl;
return 1;
}
if (theDataSets.empty())
{
std::cerr << "Unable to find the dataset that was just sent to the server, " << *fitor << std::endl;
return 1;
}
keys.clear();
//if it's not empty, then pull it.
std::vector<gdcm::DataSet>::iterator itor;
for (itor = theDataSets.begin(); itor != theDataSets.end(); itor++)
{
if (itor->FindDataElement(theIDTag))
{
gdcm::DataElement de = itor->GetDataElement(theIDTag);
const gdcm::ByteValue *bv = de.GetByteValue();
int theBufferLen = bv->GetLength();
char* theBuf = new char[theBufferLen];
bv->GetBuffer(theBuf, theBufferLen);
std::string theSearchString(theBuf, theBuf + theBufferLen);
delete [] theBuf;
keys.emplace_back(theIDTag, theSearchString);
gdcm::DataElement de2 = ds.GetDataElement(theIDTag);
de2.SetVR( gdcm::VR::INVALID );
de.SetVR( gdcm::VR::INVALID );
if (!(de == de2))
{
std::cerr << "Sent dataset does not match returned dataset ID. " << std::endl;
std::cerr << de << std::endl;
std::cerr << " vs " << std::endl;
std::cerr << de2 << std::endl;
std::cerr << "File: " << *fitor << std::endl;
return 1;
}
break;
}
else
{
continue;
}
}
if (keys.empty())
{
std::cerr << "Sent dataset " << *fitor << " was not found by resulting CFind query. " << std::endl;
return 1;
}
theQuery = gdcm::CompositeNetworkFunctions::ConstructQuery(gdcm::ePatientRootType, gdcm::ePatient, keys, gdcm::eMove );
didItWork = gdcm::CompositeNetworkFunctions::CMove(remote.c_str(), portno, theQuery,
moveReturnPort, aetitle.c_str(), call.c_str(), outputDir.c_str() );
if ( !didItWork )
{
std::cerr << "CMove failed for file " << *fitor << std::endl;
return 1;
}
delete theQuery;
std::cout << "File " << *fitor << " moved back to server." << std::endl;
}
return 0;
}
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