File: resinfo.cpp

package info (click to toggle)
gemmi 0.5.7%2Bds-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 5,344 kB
  • sloc: cpp: 48,972; python: 4,352; ansic: 3,428; sh: 302; makefile: 69; f90: 42; javascript: 12
file content (36 lines) | stat: -rw-r--r-- 1,219 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
// Copyright 2017 Global Phasing Ltd.

// Microbenchmark of gemmi::Residue::has_standard_pdb_name().
// Requires the google/benchmark library. It can be built manually:
// c++ -Wall -O2 -I../include -I$GB/include resinfo.cpp $GB/src/libbenchmark.a -pthread

#include "gemmi/resinfo.hpp"
#include <benchmark/benchmark.h>
#include <stdlib.h>               // for rand

static const std::string residue_names[10] =
    { "GLY", "ASN", "ASN", "HOH", "LEU", "DC", "G", "GLU", "ALA", "SER" };

static void find_tabulated_residue_x10(benchmark::State& state) {
  std::string names[10];
  for (int i = 0; i != 10; ++i)
    names[i] = rand() % 1000 == 0 ? "GLN" : residue_names[i];
  while (state.KeepRunning()) {
    int nh = 0;
    for (int i = 0; i != 10; ++i)
      nh += gemmi::find_tabulated_residue(names[i]).hydrogen_count;
    benchmark::DoNotOptimize(nh);
  }
}

BENCHMARK(find_tabulated_residue_x10);
BENCHMARK_MAIN();

/* Output from my laptop:

------------------------------------------------------------------
Benchmark                           Time           CPU Iterations
------------------------------------------------------------------
find_tabulated_residue_x10         52 ns         52 ns   13458745

*/