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# -*- coding: utf-8 -*-
# -- General configuration ------------------------------------------------
needs_sphinx = '5.3.0'
extensions = ['sphinx.ext.doctest', 'sphinx.ext.githubpages']
#templates_path = ['_templates']
source_suffix = '.rst'
master_doc = 'index'
project = u'Gemmi'
copyright = u'Global Phasing Ltd'
author = u'Marcin Wojdyr'
with open('../include/gemmi/version.hpp') as _f:
for _line in _f:
if _line.startswith('#define GEMMI_VERSION '):
version = _line.split()[2].strip('"')
release = version
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
pygments_style = 'sphinx'
todo_include_todos = False
highlight_language = 'c++'
default_role = 'literal'
# -- Options for HTML output ----------------------------------------------
html_theme = 'sphinx_rtd_theme'
html_static_path = ['custom.css']
# -- Options for LaTeX output ---------------------------------------------
latex_elements = {
# 'papersize': 'letterpaper',
# 'pointsize': '10pt',
# 'preamble': '',
# 'figure_align': 'htbp',
}
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
# author, documentclass [howto, manual, or own class]).
latex_documents = [
(master_doc, 'Gemmi.tex', u'Gemmi Documentation',
u'Marcin Wojdyr', 'manual'),
]
doctest_global_setup = '''
import os
import sys
assert sys.version_info[0] > 2, "Tests in docs are for Python 3 only"
disabled_features = []
try:
import numpy
except ImportError:
disabled_features.append('NumPy')
numpy = None
try:
import pandas
except ImportError:
disabled_features.append('pandas')
pandas = None
try:
import networkx
except ImportError:
disabled_features.append('networkx')
networkx = None
try:
import pynauty
except ImportError:
disabled_features.append('pynauty')
pynauty = None
mdm2_unmerged_mtz_path = os.getenv('CCP4')
if mdm2_unmerged_mtz_path:
mdm2_unmerged_mtz_path += ('/lib/python3.7/site-packages/' +
'ccp4i2/demo_data/mdm2/mdm2_unmerged.mtz')
if not os.path.isfile(mdm2_unmerged_mtz_path):
mdm2_unmerged_mtz_path = None
if mdm2_unmerged_mtz_path is None:
disabled_features.append('$CCP4')
'''
def setup(app):
app.add_css_file('custom.css')
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