1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
|
#!/usr/bin/env python
import os
import unittest
import urllib.error
import http.client
import gemmi
# for some reasons, importing common.py here gives me leak warnings
def full_path(filename):
return os.path.join(os.path.dirname(__file__), filename)
class TestFetch(unittest.TestCase):
def fetch(self, site):
cell = gemmi.read_structure(full_path('5i55.cif')).cell
import gemmi.fetch
for use_cif in [True, False]:
try:
st = gemmi.fetch.read_structure_with_code('5i55', pdb_site=site,
use_cif=use_cif)
self.assertEqual(cell, st.cell)
except urllib.error.URLError as e:
self.skipTest(f"Cannot connect to {site} ({e})")
except http.client.RemoteDisconnected as e:
self.skipTest(f"Couldn't fetch file form {site}: ({e})")
@unittest.skipIf(__name__ != '__main__', "Skip during unittest discover")
def test_rcsb(self):
self.fetch('R')
@unittest.skipIf(__name__ != '__main__', "Skip during unittest discover")
def test_pdbe(self):
self.fetch('E')
@unittest.skipIf(__name__ != '__main__', "Skip during unittest discover")
def test_pdbj(self):
self.fetch('J')
if __name__ == '__main__':
unittest.main()
|
