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// genesis
/**********************************************************************
**
** DO NOT EDIT THIS FILE IN THE neurokit DIRECTORY!
**
** Make a copy of this file in every directory that contains .p
** files and edit the copies, in order to customize neurokit for
** different simulations. When you run neurokit from other
** directories, the simulator will look for the local version of
** userprefs.g, and if it cannot find it there will look for the
** default in the neurokit directory. This version of userprefs is
** set up to run Ca channel testing simulations
**
** There are three aspects to customisation :
**
** 1 Include the appropriate script files from the /neuron/prototype
** directory and from wherever you have defined new prototype
** elements.
**
** 2 Invoke the functions that make the prototypes you want for
** your simulation.
**
** 3 Put your preferences for the user_variables defined in
** defaults.g in the copies of this file.
**
**********************************************************************/
echo using user prefs for ionchannels
/**********************************************************************
**
** 1 Including script files for prototype functions
**
**********************************************************************/
/* file for standard compartments */
include compartments
/* file for Hodgkin-Huxley Squid Na and K channels */
include hhchan
/* file for Upi's mitral cell channels */
include mitchan
include FNTchan
include CSchan
include ASTchan
include traubchan
include yamadachan
include SMSNNchan
/**********************************************************************
**
** 2 Invoking functions to make prototypes in the /library element
**
**********************************************************************/
/* To ensure that all subsequent elements are made in the library */
ce /library
/* These make the standard types of compartments that can be
** invoked in .p files */
make_cylind_compartment /* makes "compartment" */
make_sphere_compartment /* makes "compartment_sphere" */
make_cylind_symcompartment /* makes "symcompartment" */
make_sphere_symcompartment /* makes "symcompartment_sphere" */
/* These are some standard channels used in .p files */
make_Na_squid_hh /* makes "Na_squid_hh" */
make_K_squid_hh /* makes "K_squid_hh" */
make_Na_mit_tchan /* makes "Na_mit_hh" */
make_K_mit_tchan /* makes "K_mit_hh" */
make_Ca_mit_tab /* makes "Ca_mit_tab" */
make_Kca_mit_tab /* makes "Kca_mit_tab" */
make_Ca_mit_conc /* makes "Ca_mit_conc" */
make_NCa_drg_fnt
make_K_moll_cs
make_KA_moll_cs
make_Na_moll_cs
make_Ca_aplysia_ag
make_K_trit_agt
make_K_hip_traub
make_KA_bsg_yka
make_Na_bsg_yka
make_K_bsg_yka
make_Ca_bsg_yka
make_Ca_bsg_conc
make_Na_rat_smsnn
/* returning to the root element */
ce /
/**********************************************************************
**
** 3 Setting preferences for user-variables.
**
**********************************************************************/
user_cell = "/soma"
user_pfile = "soma.p"
user_name = "Upinder S. Bhalla"
user_ymin1 = -0.1
user_ymax1 = 0.09
user_xmax1 = 0.2
user_inject = 0.05
user_refresh = 20
user_runtime = 0.2
/*****************************************************************************/
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