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//genesis
// cell.g
/*
functions defined in this script
=============================================================================
FUNCTION NAME ARGUMENTS
=============================================================================
makeneuron (path,soma_l,soma_d,dend_l,dend_d)
reset_kludge
=============================================================================
*/
//=================================================
// NEURON
//=================================================
function makeneuron(path, soma_l, soma_d, dend_l, dend_d)
str path
float soma_l, soma_d
float dend_l, dend_d
// 100% of the soma active
float active_area = soma_l*PI*soma_d*1.0
create neutral {path}
pushe {path}
//=============================================
// cell body
//=============================================
makecompartment soma {soma_l} {soma_d} {Eleak}
position soma I I R{-soma_l/2.0}
setfield soma initVm {EREST_ACT} // properly initialize Vm on reset
//=============================================
// voltage dependent conductances
//=============================================
make_hhNa soma Ex_channel {active_area} {ENa} {EREST_ACT}
make_hhK soma Inh_channel {active_area} {EK} {EREST_ACT}
//=============================================
// dendrites
//=============================================
makecompartment dend1 {dend_l} {dend_d} {EREST}
link_compartment dend1 soma
makecompartment dend2 {dend_l} {dend_d} {EREST}
link_compartment dend2 dend1
//=============================================
// synaptic conductances on the dendrites
//=============================================
makechannel dend1 Ex_channel {EEx} 3.0 3.0 {GEx}
makechannel dend1 Inh_channel {EInh} 3.0 3.0 {GInh}
makechannel dend2 Ex_channel {EEx} 3.0 3.0 {GEx}
makechannel dend2 Inh_channel {EInh} 3.0 3.0 {GInh}
pope
end
// reset_kludge was a kludge to properly initialize soma Vm to EREST on reset
// In 2.0, this is handled by initVm field
function reset_kludge
reset
/* Should add some tricky business to allow cycling of colors with
overlayed soma Vm plots, as was done in 1.4 version */
end
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