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#!/usr/bin/perl
use strict;
#
# Front-end for making large union
# Copyright (C) Maarja Lepamets and University of Tartu
# You can modify and distribute this script and derivateive works freely
#
# Usage:
# MakeUnion.pl LIST1 LIST2 LIST3...
#
# NB! Please set the path to executables
#
use File::Basename;
my $nlists = scalar @ARGV;
my $list1;
my $list2;
my $out = "union";
my $xpath = ".";
if (!(-x "$xpath/glistcompare")) {
printf stderr "No glistcompare binary at %s\n", $xpath;
printf stderr "Please set the xpath variable in script code\n";
exit(1);
}
my $k = 1;
while ($nlists != 1) {
if ($nlists == scalar @ARGV) {
print STDERR "mkdir -p ${out}_${k}\n";
system "mkdir -p ${out}_${k}";
my $i = 0;
while ($i < $nlists) {
$list1 = $ARGV[$i];
if ($i == $nlists - 1) {
print STDERR "cp $list1 ${out}_${k}/copy_".basename($list1) . "\n";
system "cp $list1 ${out}_${k}/copy_".basename($list1);
last;
}
$list2 = $ARGV[$i + 1];
print STDERR "$xpath/glistcompare $list1 $list2 -o ${out}_${k}/$i"."_".($i + 1)." -u\n";
system "$xpath/glistcompare $list1 $list2 -o ${out}_${k}/$i"."_".($i + 1)." -u";
$i += 2;
}
} else {
#system "rm -r -f ${out}_".($k - 2);
my $i = 0;
my $dir = "${out}_".($k - 1);
my @files = <$dir/*>;
$nlists = scalar @files;
if ($nlists == 2) {
$list1 = $files[$i];
$list2 = $files[$i + 1];
print STDERR "$xpath/glistcompare $list1 $list2 -o union -u\n";
system "$xpath/glistcompare $list1 $list2 -o union -u";
#system "rm -r -f ${out}_".($k - 1);
last;
}
print STDERR "mkdir -p ${out}_${k}\n";
system "mkdir -p ${out}_${k}";
while ($i < $nlists) {
$list1 = $files[$i];
if ($i == $nlists - 1) {
print STDERR "cp $list1 ${out}_${k}/copy_".basename($list1) . "\n";
system "cp $list1 ${out}_${k}/copy_".basename($list1);
last;
}
$list2 = $files[$i + 1];
print STDERR "$xpath/glistcompare $list1 $list2 -o ${out}_${k}/$i"."_".($i + 1)." -u\n";
system "$xpath/glistcompare $list1 $list2 -o ${out}_${k}/$i"."_".($i + 1)." -u";
$i += 2;
}
}
$nlists = int($nlists / 2 + 0.5);
$k += 1;
}
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