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# gthsplit(1)
## NAME
gthsplit - split GenomeThreader output files
## SYNOPSIS
*gthsplit* -alignmentscore | -coverage [option ...] [file ...]
## DESCRIPTION
Split GenomeThreader output files containing intermediate results.
## OPTIONS
*-alignmentscore*::
split according to the overall alignment score (scr)
default: no
*-coverage*::
split according to coverage (cov)
default: no
*-range*::
set the percentage range used to create the sets
default: 5
*-minalignmentscore*::
set the minimum alignment score for spliced alignments to be
included into the set of spliced alignments
default: 0.00
*-maxalignmentscore*::
set the maximum alignment score for spliced alignments to be
included into the set of spliced alignments
default: 1.00
*-mincoverage*::
set the minimum coverage for spliced alignments to be
included into the set of spliced alignments
default: 0.00
*-maxcoverage*::
set the maximum coverage for spliced alignments to be
included into the set of spliced alignments
default: 9999.99
*-v*::
be verbose
default: no
*-gzip*::
write gzip compressed output file(s)
default: no
*-bzip2*::
write bzip2 compressed output file(s)
default: no
*-force*::
force writing to split files
default: no
*-help*::
display help and exit
*-version*::
display version information and exit
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