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.PS
define mediummodule {ellipse ht 0.5 wid 1.2 $1 $2}
define largemodule {ellipse ht 0.75 wid 1.8 $1}
define mediumdata {box ht 0.5 wid 1.2 $1}
define largedata {box ht 0.8 wid 1.2 $1}
scale=0.85
down
Parsing: mediummodule("option" "parsing")
move down from bottom of Parsing
Gthcallinfo: mediumdata("all options" "passed to program")
move down from bottom of Gthcallinfo
Loading: mediummodule("loading" "input files")
move down from bottom of Loading
Gthinputinfo: largedata("input files:" "genomic sequence" "reference sequence" "splice site param.")
move down from bottom of Gthinputinfo
Filter: mediummodule("similarity" "filter")
move down from bottom of Filter
Hits: mediumdata("List of" "Hits")
move left from left of Hits
Parameter: mediumdata("DP" "parameter")
move down 0.6 from bottom of Hits
DP: largemodule("DP algorithm" "for optimal" "spliced alignment")
move right from right of DP
Alignment: mediumdata("one spliced" "alignment")
move up from top of Alignment
Save: largemodule("spliced alignment" "collection")
move up from top of Save
Tree: mediumdata("binary search tree" "of spliced" "alignments")
move up from top of Tree
Outputfunc: mediummodule("output spliced" "alignments")
move up from top of Outputfunc
Output: mediumdata("output" "of spliced" "alignments")
move right from right of Gthcallinfo
# move right from right of Outputfunc
# PGL: mediummodule("compute" "PGLs" dotted)
# move up from top of PGL
# PGLOutput: mediumdata("output" "of PGLs" dotted)
# move right from right of Gthcallinfo
BSSM: mediumdata("BSSM" "parameter" "files")
move right from right of BSSM
Mkbssmparam: mediummodule("mkbssmfiles.x")
move left from left of Loading
Indices: mediumdata("index of" "genomic and" "reference sequence")
move up from top of Indices
Mkvtree: mediummodule("mkvtree.x")
arrow from Parsing.s to Gthcallinfo.n
arrow from Gthcallinfo.s to Loading.n
arrow from Loading.s to Gthinputinfo.n
arrow from Gthinputinfo.s to Filter.n
arrow from Filter.s to Hits.n
arrow from Filter.s to Parameter.n
arrow from Parameter.s to DP.n
arrow from Hits.s to DP.n "for every" "hit"
arrow from DP.e to Alignment.w
arrow from Alignment.n to Save.s dashed "possibly"
arrow from Save.n to Tree.s
arrow from Tree.n to Outputfunc.s
# arrow dotted from Tree.n to PGL.s
arrow from Outputfunc.n to Output.s
# arrow dotted from PGL.n to PGLOutput.s
arrow from BSSM.s to Loading.e
arrow from Mkbssmparam.w to BSSM.e
arrow from Indices.e to Loading.w
arrow from Mkvtree.s to Indices.n
.PE
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