1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
|
#!/bin/sh
checkerror() {
if test $? -ne 0
then
echo "failure: ${cmd}"
exit 1
fi
}
if test $# -eq 1
then
filenamelist="$1"
else
filenamelist=`find testdata/ -name '[A-Z]*.fna'`
fi
for filename in ${filenamelist}
do
echo "${filename}"
cmd="env -i bin/gt suffixerator -tis -suf -lcp -dna -indexname sfx -db ${filename}"
${cmd}
checkerror
cmd="env -i RUBYLIB=gtruby LD_LIBRARY_PATH=lib scripts/lcpintervals.rb --itv sfx"
${cmd} > itvs.result1
checkerror
cmd="env -i bin/gt dev sfxmap -enumlcpitvs -esa sfx"
${cmd} > itvs.result2
checkerror
cmd="cmp -s itvs.result1 itvs.result2"
${cmd}
checkerror
cmd="env -i RUBYLIB=gtruby LD_LIBRARY_PATH=lib scripts/lcpintervals.rb --tree sfx"
${cmd} > itvtree.result1
checkerror
cmd="env -i bin/gt dev sfxmap -enumlcpitvtree -esa sfx"
${cmd} > itvtree.result2
checkerror
cmd="env -i bin/gt dev sfxmap -enumlcpitvtreeBU -esa sfx"
${cmd} > itvtree.result3
checkerror
cmd="cmp -s itvtree.result1 itvtree.result2"
${cmd}
checkerror
cmd="cmp -s itvtree.result2 itvtree.result3"
${cmd}
checkerror
done
rm -f itvs.result1 itvs.result2
rm -f itvtree.result1 itvtree.result2 itvtree.result3
|
