File: chseqids.lua

package info (click to toggle)
genometools 1.6.2%2Bds-3
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 50,504 kB
  • sloc: ansic: 271,868; ruby: 30,327; python: 4,942; sh: 3,230; makefile: 1,214; perl: 219; pascal: 159; haskell: 37; sed: 5
file content (15 lines) | stat: -rw-r--r-- 415 bytes parent folder | download | duplicates (9)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
print ([[

File format for mapping_file:

The supplied mapping file defines a mapping table named ``chseqids''. It maps
the `sequence-region` entries given in the GFF3_file to other names.  It can be
defined as follows:

    chseqids = {
      chr1  = "seq1",
      chr2  = "seq2"
    }

When this example is used, all sequence ids ``chr1'' will be changed to ``seq1''
and all sequence ids ``chr2'' to ``seq2''.]])