File: custom_track.py

package info (click to toggle)
genometools 1.6.6%2Bds-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 50,576 kB
  • sloc: ansic: 271,876; ruby: 29,930; python: 5,106; sh: 3,083; makefile: 1,213; perl: 219; pascal: 159; haskell: 37; sed: 5
file content (93 lines) | stat: -rw-r--r-- 3,394 bytes parent folder | download | duplicates (8)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2014 Daniel Standage <daniel.standage@gmail.com>
# Copyright (c) 2008-2009 Sascha Steinbiss <steinbiss@zbh.uni-hamburg.de>
# Copyright (c) 2008-2009 Center for Bioinformatics, University of Hamburg
#
# Permission to use, copy, modify, and distribute this software for any
# purpose with or without fee is hereby granted, provided that the above
# copyright notice and this permission notice appear in all copies.
#
# THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
# WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
# MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
# ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
# WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
# ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
# OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
#

from ctypes import CFUNCTYPE, POINTER, c_char_p, c_void_p, c_int, c_ulong
from gt.dlload import gtlib
from gt.annotationsketch.color import Color
from gt.annotationsketch.style import Style
from gt.annotationsketch.graphics import Graphics
from gt.core.error import Error, gterror
from gt.core.gtrange import Range
from gt.core.gtstr import Str

RenderFunc = CFUNCTYPE(c_int, c_void_p, c_ulong, POINTER(Range), c_void_p,
                       c_void_p)
TitleFunc = CFUNCTYPE(c_int, c_void_p, c_void_p)
HeightFunc = CFUNCTYPE(c_ulong, c_void_p)
FreeFunc = CFUNCTYPE(c_void_p, c_void_p)


class CustomTrack(object):

    def __init__(self):

        # create callbacks to C script wrapper

        def get_title_w(ptr, str):
            s = Str(str)
            title = self.get_title()
            s.append_cstr(title)
            return 0

        self.get_title_cb = TitleFunc(get_title_w)

        def get_height_w(ptr):
            return self.get_height()

        self.get_height_cb = HeightFunc(get_height_w)

        def render_w(graphics, ypos, rng, sty, err):
            g = Graphics(graphics)
            s = Style(sty)
            e = Error(err)
            return self.render(g, ypos, rng.contents, s, e)

        self.render_cb = RenderFunc(render_w)

        def free_w(ptr):
            self.free()

        self.free_cb = FreeFunc(free_w)
        self.ctt = gtlib.gt_custom_track_script_wrapper_new(self.render_cb,
                                                            self.get_height_cb, self.get_title_cb, self.free_cb)
        self._as_parameter_ = self.ctt

    def __del__(self):
        try:
            gtlib.gt_custom_track_delete(self.ctt)
        except AttributeError:
            pass

    def from_param(cls, obj):
        if not isinstance(obj, CustomTrack):
            raise TypeError("argument must be a CustomTrack")
        return obj._as_parameter_

    from_param = classmethod(from_param)

    def register(cls, gtlib):
        from ctypes import c_char_p, c_void_p, c_int, POINTER
        gtlib.gt_custom_track_delete.restype = None
        gtlib.gt_custom_track_delete.argtypes = [c_void_p]
        gtlib.gt_custom_track_script_wrapper_new.restype = c_void_p
        gtlib.gt_custom_track_script_wrapper_new.argtypes = [RenderFunc,
                                                             HeightFunc, TitleFunc, FreeFunc]

    register = classmethod(register)