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#!/usr/bin/python
# -*- coding: utf-8 -*-
import unittest
import gt
import os
op = os.path
datadir = op.abspath(op.join(op.dirname(__file__), "..", "..", "testdata"))
gtdatadir = op.abspath(op.join(op.dirname(__file__), "..", "..", "gtdata"))
class TypeCheckerTest(unittest.TestCase):
def test_builtin(self):
tc = gt.extended.TypeCheckerBuiltin()
self.assertTrue(tc.is_valid("gene"))
self.assertFalse(tc.is_valid("nothing"))
def test_obo_success(self):
tc = gt.extended.TypeCheckerOBO(
os.path.join(gtdatadir, "obo_files/sofa.obo"))
self.assertTrue(tc.is_valid("gene"))
self.assertFalse(tc.is_valid("nothing"))
self.assertFalse(tc.is_valid(""))
self.assertFalse(tc.is_valid(None))
def test_obo_fail(self):
self.assertRaises(
gt.core.error.GTError, gt.extended.TypeCheckerOBO, "nonexistant"
)
self.assertRaises(
gt.core.error.GTError,
gt.extended.TypeCheckerOBO,
os.path.join(datadir, "obo_files/corrupt_instance_stanza.obo"),
)
if __name__ == "__main__":
unittest.main()
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