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genometools 1.6.6%2Bds-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 50,576 kB
  • sloc: ansic: 271,876; ruby: 29,930; python: 5,106; sh: 3,083; makefile: 1,213; perl: 219; pascal: 159; haskell: 37; sed: 5

Folder: scripts

d .. (parent)
- - rwxr-xr-x 359 DW-pre-commit
- - rw-r--r-- 4,615 SEmatch.rb
- - rwxr-xr-x 569 Suffixerator-calls.rb
- - rw-r--r-- 61,580 Suffixerator-table.rb
- - rwxr-xr-x 1,244 add-copyright.sh
- - rwxr-xr-x 1,697 add_revcmp.rb
- - rwxr-xr-x 1,152 all-vs-all.sh
- - rwxr-xr-x 267 alloutputoptions.rb
- - rwxr-xr-x 3,447 appendsuffix.rb
- - rwxr-xr-x 2,420 ascQorder.rb
- - rwxr-xr-x 253 blast2gff.rb
- - rwxr-xr-x 2,096 blat2gff3
- - rwxr-xr-x 1,378 calcmonosize.rb
- - rwxr-xr-x 1,000 callrununique.sh
- - rwxr-xr-x 630 calltestcase.sh
- - rwxr-xr-x 1,247 check-fstperquery.rb
- - rwxr-xr-x 89 check_api_includes
- - rwxr-xr-x 93 check_core_includes
- - rwxr-xr-x 1,181 checkchains.rb
- - rwxr-xr-x 193 checklcp.sh
- - rwxr-xr-x 1,080 checkmaxpairs.sh
- - rwxr-xr-x 1,975 checktallymer.sh
- - rwxr-xr-x 236 checkunique.sh
- - rwxr-xr-x 958 citest.rb
- - rwxr-xr-x 7,914 class_gen.rb
- - rwxr-xr-x 4,321 class_implement.rb
- - rwxr-xr-x 538 cleanpp.sh
- - rwxr-xr-x 1,194 cmp-seedmatches.rb
- - rwxr-xr-x 1,361 cmp-seex-bench.rb
- - rwxr-xr-x 1,457 cmp-seex-iter.rb
- - rwxr-xr-x 3,245 cmp-seex.rb
- - rwxr-xr-x 1,592 cmp_db_query_exch.rb
- - rwxr-xr-x 834 cmpdbfile.sh
- - rwxr-xr-x 1,183 cmplcpintervals.sh
- - rw-r--r-- 10,101 code_templates.rb
- - rwxr-xr-x 5,358 codegen
- - rw-r--r-- 1,609 codegen_module.rb
- - rwxr-xr-x 1,214 compare_dust.sh
- - rwxr-xr-x 251 comparesfx.sh
- - rwxr-xr-x 4,254 condenseq_blastsearch_stats.rb
- - rwxr-xr-x 1,410 condenseq_hmmsearch_stats.rb
- - rwxr-xr-x 952 convert2myersformat.rb
- - rwxr-xr-x 3,287 coverage-MEM.rb
- - rwxr-xr-x 81 create_amalgamation
- - rwxr-xr-x 296 create_html
- - rwxr-xr-x 135 create_manpages
- - rwxr-xr-x 1,528 ctags.sh
- - rwxr-xr-x 1,502 cutsequences.rb
- - rwxr-xr-x 2,109 diff-cover.rb
- - rwxr-xr-x 521 do.sh
- - rwxr-xr-x 119 dos2unix
- - rwxr-xr-x 4,337 dwmake.rb
- - rwxr-xr-x 1,828 encodesql2gff3
- - rwxr-xr-x 466 enumkmers.rb
- - rwxr-xr-x 161 enumseqfiles.sh
- - rwxr-xr-x 245 esa-compressed.sh
- - rwxr-xr-x 230 esa-sfxthreaded.sh
- - rwxr-xr-x 585 esq-in-bytes.sh
- - rwxr-xr-x 863 estim-kmer-size.rb
- - rw-r--r-- 9,691 evalseedhash.rb
- - rwxr-xr-x 575 evalue-filter.rb
- - rwxr-xr-x 3,230 expand_license
- - rwxr-xr-x 373 extract-seed.rb
- - rwxr-xr-x 219 extract-seqs.sh
- - rwxr-xr-x 645 failure.sh
- - rw-r--r-- 2,375 fasta.rb
- - rwxr-xr-x 3,016 findfasta.rb
- - rwxr-xr-x 2,173 fmt_embl.rb
- - rwxr-xr-x 2,235 fmt_gbk.rb
- - rwxr-xr-x 1,410 gc-parse.rb
- - rwxr-xr-x 261 gdb-stack.sh
- - rwxr-xr-x 7,485 gen-display-struct.rb
- - rwxr-xr-x 18,575 gen-esa-bottomup.rb
- - rwxr-xr-x 1,278 gen-esa-bottomup.sh
- - rwxr-xr-x 24,045 gen-intsets.rb
- - rwxr-xr-x 18,819 gen-radixsort-ip.rb
- - rwxr-xr-x 272 gen-radixsort-ip.sh
- - rwxr-xr-x 14,973 gen-randseq.rb
- - rwxr-xr-x 1,693 gen_zsh_completion.rb
- - rwxr-xr-x 195 generate_hmmer_squid_h
- - rwxr-xr-x 841 generate_hmmer_squidconf_h
- - rwxr-xr-x 1,020 genlengthsorted.rb
- - rw-r--r-- 8,098 genomediff.rb
- - rwxr-xr-x 1,148 genswtest.sh
- - rwxr-xr-x 3,852 gfa2lint.rb
- - rwxr-xr-x 2,934 gff3.rb
- - rwxr-xr-x 1,311 gff3tidy_all
- - rwxr-xr-x 4,483 gmap2gff3
- - rwxr-xr-x 361 gprof-run.sh
- - rwxr-xr-x 180 gtgrep.sh
- - rwxr-xr-x 1,288 gthclean.sh
- - rwxr-xr-x 1,378 gthcleanrec.sh
- - rwxr-xr-x 3,925 help2comp.py
- - rwxr-xr-x 21,683 hop.sh
- - rw-r--r-- 68 incl.sed
- - rwxr-xr-x 55 iterate_unit_tests.sh
- - rwxr-xr-x 458 iterrunmerge.sh
- - rwxr-xr-x 278 itershulength.sh
- - rwxr-xr-x 269 itertestcases.sh
- - rwxr-xr-x 7,646 lcpintervals.rb
- - rwxr-xr-x 3,363 line_ranking.rb
- - rwxr-xr-x 512 ltrtest.sh
- - rwxr-xr-x 972 make_debug.sh
- - rw-r--r-- 1,406 make_testdata_encseqs.sh
- - rwxr-xr-x 1,028 make_with_cairo.sh
- - rwxr-xr-x 1,084 makeprimetable.sh
- - rwxr-xr-x 727 maketags.sh
- - rwxr-xr-x 260 maketexps.sh
- - rwxr-xr-x 470 manyshort-somelong.rb
- - rwxr-xr-x 697 match-stat.rb
- - rwxr-xr-x 492 matched-seqpairs.rb
- - rwxr-xr-x 13,174 matches-compare.rb
- - rwxr-xr-x 1,468 matches2ani.rb
- - rwxr-xr-x 7,593 mk_ft_longest_common.rb
- - rwxr-xr-x 177 mkesa-fmt.rb
- - rwxr-xr-x 19,128 mksainseq.rb
- - rwxr-xr-x 471 mksimreads.sh
- - rwxr-xr-x 1,220 mkswapbits.rb
- - rwxr-xr-x 697 mktexoptstable.rb
- - rwxr-xr-x 2,481 mktirs.lua
- - rwxr-xr-x 560 pack-trembl.sh
- - rw-r--r-- 1,477 packed-argest.lhs
- - rwxr-xr-x 758 pairsums.sh
- - rwxr-xr-x 658 parse_massif.rb
- - rwxr-xr-x 957 pre-commit
- - rwxr-xr-x 1,409 prepend_all
- - rw-r--r-- 142 print_sequence.rb
- - rwxr-xr-x 381 queries.sh
- - rwxr-xr-x 397 randlines.rb
- - rwxr-xr-x 5,674 rdj-checkcontigs.rb
- - rwxr-xr-x 81,250 rdj-parsetranscript.rb
- - rw-r--r-- 14,532 rdj-runbenchmark.sh
- - rwxr-xr-x 1,811 rdj-spacepeak.sh
- - rwxr-xr-x 989 renamer.rb
- - rwxr-xr-x 447 repfind-change.rb
- - rwxr-xr-x 1,611 repfind-cmp.rb
- - rwxr-xr-x 1,129 repfvsrepf.sh
- - rwxr-xr-x 3,717 report2fasta
- - rwxr-xr-x 397 reset_fasta_ids.rb
- - rwxr-xr-x 2,903 result2best.rb
- - rwxr-xr-x 417 reverse-complement.rb
- - rwxr-xr-x 368 rf2of.rb
- - rwxr-xr-x 193 rmwildcard.rb
- - rwxr-xr-x 2,284 run-se-da.sh
- - rwxr-xr-x 3,129 run2tex.rb
- - rwxr-xr-x 4,165 run_genomediff.rb
- - rwxr-xr-x 1,902 run_shu_esa_pck.rb
- - rwxr-xr-x 179 runetags.sh
- - rwxr-xr-x 936 runfirstcodes.sh
- - rwxr-xr-x 102 rungfm.sh
- - rwxr-xr-x 1,390 runmaxpairs.sh
- - rwxr-xr-x 1,154 runmerge.sh
- - rwxr-xr-x 425 runmkesa-sfx.sh
- - rwxr-xr-x 2,024 runmkfm.sh
- - rwxr-xr-x 2,191 runmkfm_dw.sh
- - rwxr-xr-x 385 runpckdfs.sh
- - rwxr-xr-x 1,921 rununique-test.sh
- - rwxr-xr-x 595 rununique.sh
- - rw-r--r-- 824 sample_encseq.lua
- - rwxr-xr-x 225 sarr-trembl.sh
- - rwxr-xr-x 1,112 se-permutation.rb
- - rwxr-xr-x 1,401 sed_all
- - rwxr-xr-x 2,051 seeds2maxmatches.rb
- - rwxr-xr-x 3,832 seex-best-pair.rb
- - rwxr-xr-x 2,467 seex-cmp-repfind.rb
- - rwxr-xr-x 19,523 sensitivity-test.rb
- - rwxr-xr-x 1,554 seqselect.rb
- - rwxr-xr-x 351 sfx-big.sh
- - rwxr-xr-x 1,082 shulength.sh
- - rwxr-xr-x 3,094 sim-read-mapping.sh
- - rwxr-xr-x 1,061 single-read-mapping.sh
- - rwxr-xr-x 1,606 skclean.sh
- - rwxr-xr-x 122 sketchtest.sh
- - rwxr-xr-x 3,589 skmake.rb
- - rwxr-xr-x 1,102 skmemtest.sh
- - rwxr-xr-x 1,297 sktest-match.sh
- - rwxr-xr-x 2,119 sktest.sh
- - rwxr-xr-x 1,123 skyline.rb
- - rwxr-xr-x 792 sortmaxdepth.sh
- - rwxr-xr-x 2,291 splitmultifasta.rb
- - rwxr-xr-x 1,239 spmcheck.sh
- - rwxr-xr-x 1,107 spmfilter.rb
- - rwxr-xr-x 315 spmop.sh
- - rwxr-xr-x 7,840 src_check
- - rwxr-xr-x 700 src_check_header.rb
- - rwxr-xr-x 1,364 src_clean
- - rwxr-xr-x 1,081 tar_root.sh
- - rwxr-xr-x 3,949 template2c.pl
- - rwxr-xr-x 414 tr2deskeys.rb
- - rw-r--r-- 545 turnwheel.rb
- - rwxr-xr-x 179 unix2dos
- - rwxr-xr-x 516 vmnameclash.sh
- - rwxr-xr-x 292 weed-stale-objects.sh