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#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2008 Sascha Steinbiss <steinbiss@zbh.uni-hamburg.de>
# Copyright (c) 2008 Center for Bioinformatics, University of Hamburg
#
# Permission to use, copy, modify, and distribute this software for any
# purpose with or without fee is hereby granted, provided that the above
# copyright notice and this permission notice appear in all copies.
#
# THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
# WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
# MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
# ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
# WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
# ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
# OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
#
from gt.core import *
from gt.extended import *
from gt.annotationsketch import *
import sys
import re
class TestFailedError(Exception):
pass
if __name__ == "__main__":
fn = FeatureNode.create_new("test", "type", 100, 500, "+")
fn.add_attribute("test", "testval")
fn.add_attribute("test2", "testval2")
if fn.score_is_defined():
raise TestFailedError
fn.set_score(2)
if not fn.score_is_defined():
raise TestFailedError
if fn.get_score() != 2:
raise TestFailedError
fn.unset_score()
if fn.score_is_defined():
raise TestFailedError
if fn.has_type("foo"):
raise TestFailedError
if not fn.has_type("type"):
raise TestFailedError
if not fn.get_type() == "type":
raise TestFailedError
fn.set_type("foo")
if not fn.has_type("foo"):
raise TestFailedError
if not fn.get_type() == "foo":
raise TestFailedError
if not fn.get_strand() == "+":
raise TestFailedError
fn2 = FeatureNode.create_new("test", "type2", 200, 300, "+")
fn.add_child(fn2)
num_attrs = 0
for (tag, val) in fn.each_attribute():
if not val == fn.get_attribute(tag):
raise TestFailedError
num_attrs += 1
if not num_attrs == 2:
raise TestFailedError
if fn.get_phase() != 3: #undefined
raise TestFailedError
fn.set_phase(0)
if fn.get_phase() != 0: #zero
raise TestFailedError
fni = FeatureNodeIteratorDepthFirst(fn)
num_features = 0
tfn = fni.next()
while tfn:
num_features += 1
tfn = fni.next()
if num_features != 2:
raise TestFailedError
fn3 = FeatureNode.create_new("test", "type3", 250, 300, "+")
fn.add_child(fn3)
fni = FeatureNodeIteratorDepthFirst(fn)
num_features = 0
tfn = fni.next()
while tfn:
num_features += 1
tfn = fni.next()
if num_features != 3:
raise TestFailedError
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