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Description: introducing format_as functions to comply with fmtlib 10
Author: Pierre Gruet <pgt@debian.org>
Bug-Debian: https://bugs.debian.org/1086565
Forwarded: https://github.com/GenomicsDB/GenomicsDB/issues/346
Last-Update: 2024-11-30
--- a/src/main/cpp/src/api/genomicsdb.cc
+++ b/src/main/cpp/src/api/genomicsdb.cc
@@ -40,6 +40,8 @@
# include <malloc.h>
#endif
+#include <fmt/format.h>
+
#include "annotation_service.h"
#include "broad_combined_gvcf.h"
#include "query_variants.h"
@@ -369,6 +371,10 @@
return query_variant_calls(processor, "", NONE);
}
+auto format_as(GenomicsDB::query_config_type_t q) {
+ return fmt::underlying(q);
+}
+
GenomicsDBVariantCalls GenomicsDB::query_variant_calls(GenomicsDBVariantCallProcessor& processor,
const std::string& query_configuration,
const query_config_type_t query_configuration_type) {
--- a/src/main/cpp/src/loader/tiledb_loader.cc
+++ b/src/main/cpp/src/loader/tiledb_loader.cc
@@ -22,6 +22,8 @@
* CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
*/
+#include <fmt/format.h>
+
#include "tiledb_loader.h"
#include "timer.h"
#include "vcf2binary.h"
@@ -206,6 +208,10 @@
m_exchanges.clear();
}
+auto format_as(VidFileTypeEnum v) {
+ return fmt::underlying(v);
+}
+
File2TileDBBinaryBase* VCF2TileDBConverter::create_file2tiledb_object(const FileInfo& file_info, const uint64_t local_file_idx,
const std::vector<ColumnRange>& partition_bounds) {
File2TileDBBinaryBase* file2binary_base_ptr = 0;
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