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# Configuration file for the Sphinx documentation builder.
#
# This file only contains a selection of the most common options. For a full
# list see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html
# -- Path setup --------------------------------------------------------------
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
# import os
# import sys
# sys.path.insert(0, os.path.abspath('.'))
import sphinx_rtd_theme
# -- Project information -----------------------------------------------------
project = 'GenomicsDB'
copyright = '2020, GenomicsDB.org'
author = 'Scott Hill'
# -- General configuration ---------------------------------------------------
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
'breathe',
'nbsphinx',
'myst_parser',
'sphinx_rtd_theme',
# extensions below are for GenomicsDB-Python
'sphinx.ext.autodoc',
'sphinx.ext.viewcode',
'sphinx.ext.napoleon'
]
source_suffix = ['.rst', '.md']
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path.
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
# The master toctree document.
master_doc = 'index'
# -- Options for HTML output -------------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'
# Theme options are theme-specific and customize the look and feel of a
# theme further. For a list of options available for each theme, see the
# documentation.
#
html_theme_options = {
'navigation_depth': -1,
'collapse_navigation': False
}
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
breathe_projects = {'genomicsdb': 'doxydocs/xml'}
breathe_default_project = "genomicsdb"
# enable TOC links for protobuf documentation
myst_all_links_external = True
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