1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
|
Test GenomicsDB Demo Workspace
1. Set Environment Variable GENOMICSDB_DEMO_WS=/path/to/genomicsdb/demo/ws
2. Run `java -cp /path/to/genomicsdb-build/target/genomicsdb-1.5.0-SNAPSHOT-allinone-spark.jar /path/to/example/GenomicsTestGenomicsDBDemo.java`
e.g. Output
```
Summary Elapsed time: 568s
Interval: 2507743582-2507762731 calls=2962039
Summary for REF=="A": Elapsed time: 139s
Interval: 2507743582-2507762731 calls=400432
Summary for REF=="A" && ALT|="T": Elapsed time: 75s
Interval: 2507743582-2507762731 calls=82245
Summary for REF=="A" && ALT|="T" && resolve(GT, REF, ALT)&="T/T": Elapsed time: 98s
Interval: 2507743582-2507762731 calls=82245
```
|