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/** \file
\brief Contains the ProgramOptionsDialog class and its helper classes, TEnzymeSettingsTab (which is also used in TVectorEditor) and TEnzymeRules
*/
#ifndef _ProgramOptionsDialog_h_
#define _ProgramOptionsDialog_h_
#include "main.h"
class TVector ;
#define EST_GLOBAL 0
#define EST_PROJECT 1
#define EST_SINGLE 2
/** \brief The "tab" for global and per-sequence enzyme/methylation/etc. settings
*/
class TEnzymeSettingsTab : public wxPanel
{
public :
TEnzymeSettingsTab ( wxWindow *parent = NULL , int _mode = EST_GLOBAL ) ; ///< Constructor
virtual void updateColorButton ( wxButton *b , wxColour &c ) ; ///< Updates the color of one of the color choice buttons
virtual void updateGlobalEnzymes () ; ///< Update the global enzymes list
virtual void updateColor ( wxColour &c ) ; ///< ???
virtual void OnEnzymeCheckbox ( wxCommandEvent &event ) ; ///< Enyzme checkbox event handler
virtual void OnButton1 ( wxCommandEvent &event ) ; ///< Button 1 (single cutter) event handler
virtual void OnButton2 ( wxCommandEvent &event ) ; ///< Button 2 (double cutter) event handler
virtual void OnButton3 ( wxCommandEvent &event ) ; ///< Button 3 (triple cutter) event handler
wxCheckBox *useSettings ;
wxFlexGridSizer *optionsSizer ;
wxSpinCtrl *minCutoff , *maxCutoff ;
wxCheckBox *useMinCutoff , *useMaxCutoff ;
wxCheckBox *use_color_coding , *join_enzymes ;
wxCheckBox *recog4 , *recog5 , *recog6 , *recog6p ;
wxCheckBox *pattern3 , *pattern5 , *pattern_blunt ;
wxCheckBox *met_dam , *met_dcm ;
wxCheckBox *showgc ;
wxChoice *default_group ;
wxButton *bcol1 , *bcol2 , *bcol3 ;
wxColour col1 , col2 , col3 ;
int mode ;
DECLARE_EVENT_TABLE()
} ;
/** \brief The dialog containing program end enzyme global settings
*/
class ProgramOptionsDialog : public wxDialog
{
public :
ProgramOptionsDialog(wxWindow *parent, const wxString& title ) ; ///< Constructor
~ProgramOptionsDialog () ; ///< Destructor
virtual void OnOK ( wxCommandEvent &ev ) ; ///< OK button event handler
virtual void OnCancel ( wxCommandEvent &ev ) ; ///< Cancel button event handler
virtual void OnAACol ( wxCommandEvent &ev ) ; ///< Amino acid color event handler
virtual void OnCharHook(wxKeyEvent& event) ; ///< Key event handler
vector <int> translation_tables ;
wxNotebook *nb ; ///< Pointer to the wxNotebook structure containing the tabs
TEnzymeSettingsTab *globalEnzymesPanel ;
wxPanel *globalSettingsPanel ;
wxChoice *language ; ///< Pointer to the dropdown language list
wxChoice *nonstandard_translation_table ;
wxCheckBox *enhancedDisplay , *vectorTitle , *vectorLength ,
*loadLastProject , *useMetafile , *showSplashScreen ,
*checkUpdate , *useInternalHelp , *doRegisterStuff ,
*showEnzymePos , *use_nonstandard_translation_table ,
*showTips , *useTwoToolbars , *useOnlineHelp , *showToolTips ,
*showLowercaseDNA;
wxTextCtrl *proxyName , *proxyPort , *orfLength ;
wxRadioBox *editFeatureMode ; ///< Pointer to the list of choices of how to treat edited items
wxRadioBox *showStopCodon ; ///< Pointer to the list of choices of how to display stop codons
wxColour aacol ; ///< The color in which to draw the amino acids in DNA mode
private :
virtual void initGlobalSettings () ; ///< Initialize "Global settings" tab
virtual void initGlobalEnzymes () ; ///< Initialize "Global enzyme settings" tab
int bo , lh ;
DECLARE_EVENT_TABLE()
} ;
/** \brief Stores, loads, stores, and compares enzyme settings
*/
class TEnzymeRules
{
public :
TEnzymeRules () { init () ; } ///< Constructor
virtual ~TEnzymeRules () {} ; ///< Destructor (empty)
virtual void init () ; ///< Initialization
virtual void load_global_settings () ; ///< Loads global settings from the database
virtual void save_global_settings () ; ///< Save global settings to the database
virtual void setup_options ( TEnzymeSettingsTab *est ) ; ///< Set options in the tab
virtual void lookup_options ( TEnzymeSettingsTab *est ) ; ///< Look up options from the tab
virtual bool isEqual ( TEnzymeRules &r ) ; ///< Compare with another set of settings
virtual wxString to_string () ; ///< "Compress" to storable string
virtual void from_string ( wxString &s ) ; ///< "Decompress" from storage string
virtual void getVectorCuts ( TVector *v ) ;
virtual wxColour *getColor ( int cuts ) ; ///< Returns a pointer to a wxColour structure with the correct color for the given number of cuts
bool useit ;
int min_cutoff , max_cutoff ;
bool use_min_cutoff , use_max_cutoff ;
bool recog4 , recog5 , recog6 , recog_longer ;
bool pattern3 , pattern5 , pattern_blunt ;
bool showgc ;
wxString default_group ;
wxColour col1 , col2 , col3 ;
bool join_enzymes , use_color_coding ;
int methylation ;
private :
virtual wxColour scan_color ( wxString s ) ; ///< Make color from string
} ;
#endif
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