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#include "TSequencingAssistantDialog.h"
BEGIN_EVENT_TABLE(TSequencingAssistantDialog, wxDialog )
EVT_CHAR_HOOK(TSequencingAssistantDialog::OnCharHook)
EVT_CHOICE(SAD_SEQUENCE,TSequencingAssistantDialog::OnCheckOK)
EVT_CHOICE(SAD_ABI1,TSequencingAssistantDialog::OnCheckOK)
EVT_CHOICE(SAD_ABI2,TSequencingAssistantDialog::OnCheckOK)
END_EVENT_TABLE()
TSequencingAssistantDialog::TSequencingAssistantDialog (wxWindow *parent , const wxString& title )
: wxDialog ( parent , -1 , title )
{
myapp()->frame->push_help ( _T("GENtle/Sequencing Assistant Dialog") ) ;
wxBoxSizer *v0 = new wxBoxSizer ( wxVERTICAL ) ;
wxFlexGridSizer *h1a = new wxFlexGridSizer ( 4 , 2 , 2 , 2 ) ;
wxBoxSizer *h2 = new wxBoxSizer ( wxHORIZONTAL ) ;
sequence = new wxChoice ( this , SAD_SEQUENCE ) ;
abi1 = new wxChoice ( this , SAD_ABI1 ) ;
abi2 = new wxChoice ( this , SAD_ABI2 ) ;
// Sequence/sequencing data dropdown boxes
h1a->Add ( new wxStaticText ( this , -1 , txt("t_sad_sequence") ) , 0 , wxEXPAND|wxALL , 5 ) ;
h1a->Add ( sequence , 1 , wxEXPAND|wxALL , 5 ) ;
h1a->Add ( new wxStaticText ( this , -1 , txt("t_sad_abi1") ) , 0 , wxEXPAND|wxALL , 5 ) ;
h1a->Add ( abi1 , 1 , wxEXPAND|wxALL , 5 ) ;
h1a->Add ( new wxStaticText ( this , -1 , txt("t_sad_abi2") ) , 0 , wxEXPAND|wxALL , 5 ) ;
h1a->Add ( abi2 , 1 , wxEXPAND|wxALL , 5 ) ;
// OK/Cancel
ok = new wxButton ( this , wxID_OK , txt("b_ok") ) ;
wxButton *btCC = new wxButton ( this , wxID_CANCEL , txt("b_cancel") ) ;
h2->Add ( ok ) ;
h2->Add ( btCC ) ;
// Initial help text
v0->Add ( new wxStaticText ( this , -1 , txt("t_sad_text") , wxDefaultPosition , wxSize(400,60) , wxALIGN_CENTRE ) ,
0 , wxEXPAND|wxALL , 5 ) ;
v0->Add ( h1a , 0 , wxEXPAND|wxALL , 5 ) ;
v0->Add ( h2 , 0 , wxCENTER|wxALL , 5 ) ;
// Initialize dropdown boxes
sequence->Append ( _T("<none>") ) ;
abi1->Append ( _T("<none>") ) ;
abi2->Append ( _T("<none>") ) ;
dna.push_back ( NULL ) ;
abi.push_back ( NULL ) ;
for ( int a = 0 ; a < myapp()->frame->children.size() ; a++ )
{
ChildBase *c = myapp()->frame->children[a] ;
if ( c->def == _T("dna") )
{
sequence->Append ( c->getName() ) ;
dna.push_back ( c ) ;
}
else if ( c->def == _T("ABIviewer") )
{
abi1->Append ( c->getName() ) ;
abi2->Append ( c->getName() ) ;
abi.push_back ( c ) ;
}
}
// Pre-select if only two sequencing data items are present
sequence->Select ( 0 ) ;
abi1->Select ( 0 ) ;
abi2->Select ( 0 ) ;
if ( abi1->GetCount() == 3 )
{
abi1->Select ( 1 ) ;
abi2->Select ( 2 ) ;
}
else if ( abi1->GetCount() == 2 ) abi1->Select ( 1 ) ;
if ( sequence->GetCount() == 2 ) sequence->Select ( 1 ) ;
wxCommandEvent ev ;
OnCheckOK ( ev ) ;
// Make it so!
SetSizer ( v0 ) ;
v0->Fit ( this ) ;
Center() ;
}
TSequencingAssistantDialog::~TSequencingAssistantDialog ()
{
myapp()->frame->pop_help () ;
}
void TSequencingAssistantDialog::OnCheckOK ( wxCommandEvent &ev )
{
bool isok = true ;
if ( sequence->GetSelection() <= 0 ) isok = false ;
if ( abi1->GetSelection() <= 0 && abi2->GetSelection() <= 0 ) isok = false ;
ok->Enable ( isok ) ;
}
void TSequencingAssistantDialog::OnCharHook(wxKeyEvent& event)
{
int k = event.GetKeyCode () ;
wxCommandEvent ev ;
if ( k == WXK_ESCAPE ) EndModal ( wxID_CANCEL ) ; //OnCancel ( ev ) ;
else if ( k == WXK_F1 ) myapp()->frame->OnHelp(ev) ;
else event.Skip() ;
}
void TSequencingAssistantDialog::fix_rev_compl ( int sel )
{
if ( sel == -2 ) // Try both
{
fix_rev_compl ( abi1->GetSelection() ) ;
fix_rev_compl ( abi2->GetSelection() ) ;
return ;
}
if ( sel == 0 || sel == wxNOT_FOUND ) return ; // None selected
int sel_dna = sequence->GetSelection() ;
if ( sel_dna == 0 || sel_dna == wxNOT_FOUND ) return ; // None selected
TABIviewer *ab = (TABIviewer*) abi[sel] ;
wxString s_abi = ab->vec->getSequence() ;
wxString s_dna1 = dna[sel_dna]->vec->getStrand53() ;
wxString s_dna2 = dna[sel_dna]->vec->getStrand35() ;
if ( dna[sel_dna]->vec->isCircular() )
{
s_dna1 += s_dna1.Left ( s_abi.length() ) ;
s_dna2 += s_dna2.Left ( s_abi.length() ) ;
}
// Try to find parts
int a , part_length = 10 , cnt1 = 0 , cnt2 = 0 ;
for ( a = 0 ; a < s_abi.length() ; a += part_length )
{
wxString part = s_abi.Mid ( a , part_length ) ;
if ( -1 != s_dna1.Find ( part ) ) cnt1++ ;
if ( -1 != s_dna2.Find ( part ) ) cnt2++ ;
}
if ( cnt1 < cnt2 ) ab->toggle_inv_compl() ;
else if ( cnt1 < 3 && cnt2 < 3 ) wxMessageBox ( ab->vec->getName() + txt("t_sad_warning_mismatch") ) ;
}
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