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#ifndef _PROTEOLYSIS_H_
#define _PROTEOLYSIS_H_
#include "main.h"
class TProtease ;
class TProteolysisGel : public wxScrolledWindow
{
public :
TProteolysisGel(wxWindow* parent, wxWindowID id = -1 ) ;
virtual void OnDraw(wxDC& dc) ; ///< Redraw
virtual void OnEvent(wxMouseEvent& event); ///< Mouse event handler
wxArrayInt screen , logical ;
DECLARE_EVENT_TABLE()
} ;
typedef vector <TProtease*> TProteaseArray ;
typedef vector <TProteaseCut*> TProteaseCutArray ;
class TProteolysisSuggestion
{
public :
TProteaseArray proteases ;
wxString name , desc ;
int grade ;
} ;
bool operator < ( const TProteolysisSuggestion &c1 , const TProteolysisSuggestion &c2 ) ;
bool operator == ( const TProteolysisSuggestion &c1 , const TProteolysisSuggestion &c2 ) ;
class TProteolysis : public wxDialog
{
public :
TProteolysis(TAminoAcids *_parent, const wxString& title ) ; ///< Constructor
virtual ~TProteolysis () ; ///< Destructor
void OnOK ( wxCommandEvent &ev ) ; ///< OK button event handler
void OnCancel ( wxCommandEvent &ev ) ; ///< Cancel button event handler
void OnAll ( wxCommandEvent &ev ) ; ///< "All" button event handler
void OnNone ( wxCommandEvent &ev ) ; ///< "None" button event handler
void OnReport ( wxCommandEvent &ev ) ; ///< "Report" button event handler
void OnProtease ( wxCommandEvent &ev ) ; ///< Protease list event handler
void OnIgnore ( wxCommandEvent &ev ) ; ///< Ignore list event handler
void OnSepFragments ( wxCommandEvent &ev ) ; ///< Separate fragments event handler
void OnSepResults ( wxCommandEvent &ev ) ; ///< Separation results event handler
void OnCuts ( wxCommandEvent &ev ) ; ///< Cut list event handler
void OnShowGel ( wxCommandEvent &ev ) ; // Show/refresh gel
void OnPartial ( wxCommandEvent &ev ) ; // Toggle partial digestion
void OnCharHook(wxKeyEvent& event) ; ///< Key event handler
void OnSortResults(wxCommandEvent& event) ; ///< Sort results event handler
void OnNumProts(wxCommandEvent& event) ; ///< Number of proteases event handler
void OnResults ( wxCommandEvent &ev ) ; ///< Fragment list checkbox changed
void draw_gel ( wxDC &dc ) ; ///< Draw the virtual gel
void select_fragments ( const wxArrayInt &ai ) ;
private :
void recalc () ;
void calc_cut_list () ;
void calc_fragment_list () ;
void calc_spearation () ;
void calc_spearation_sub ( int depth , TProteaseArray &prop , vector <TFragment> &tobe , int start = 0 ) ;
void show_gel () ;
void show_fragment_list () ;
double get_weight ( int from , int to ) ;
int get_y ( double y , int h , double min , double max ) ;
void determine_cuts ( TProteaseArray &prop , TProteaseCutArray &apc ) ;
void remove_ignored_cuts ( TProteaseCutArray &apc ) ;
void sort_cuts ( TProteaseCutArray &apc ) ;
void add_final_piece ( TProteaseCutArray &apc ) ;
void find_cutting_proteases () ;
TAminoAcids *parent ;
TVector *v ;
TStorage *ls ;
wxCheckListBox *proteases , *ignore , *cuts , *results , *sep_fragments ;
wxListBox *sep_results ;
wxRadioBox *sep_num_prot ;
wxCheckBox *show_uncut , *create_fragments, *create_labels , *use_proteases , *partial_digestion ;
TProteolysisGel *gel ;
TProteaseCutArray pc ;
wxTextCtrl *sep_desc ;
vector <TFragment> fragments ;
wxRadioBox *sortresults ;
vector <TProteolysisSuggestion> suggestions ;
vector <TProtease*> pr_cache , cutting_proteases ;
vector <TProteaseCutArray> pc_cache ;
int max_dep ;
DECLARE_EVENT_TABLE()
} ;
#endif
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