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/** \file
\brief The TUReadSeq class
*/
#ifndef _TUREADSEQ_H_
#define _TUREADSEQ_H_
#include "main.h"
class TGenBank ;
/// This is a wrapper class for ureadseq, which can read many sequence formats
class TUReadSeq
{
public :
TUReadSeq ( wxString _filename = _T("") ) ; ///< Constructor
~TUReadSeq () {} ; ///< Destructor (empty)
void getFormat () ; ///< Try to determine format
int getSequenceNames () ; ///< Get the names of the sequences
void getSequences () ; ///< Get the sequences
void convert ( TGenBank &gb ) ; ///< Convert the sequences to GenBank format
static int getSeqType ( wxString t ) ; ///< Return the sequence type
short error ; // Parsing error
private :
wxString filename ; ///< Name of source file
short format ;
short numseqs ;
long skiplines ;
wxArrayString seq_names ;
wxArrayString seqs ;
} ;
#endif
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