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/** \file
\brief Contains the TVirtualGel class, as well as the TGelLane and TMyGelControl helper classes
*/
#ifndef _TVIRTUAL_GEL_H_
#define _TVIRTUAL_GEL_H_
#include "main.h"
#include "ChildBase.h"
class TMyGelControl ;
/** \class TGelLane
\brief This class represents a lane on a virtual gel
*/
class TGelLane
{
public :
TGelLane () ; ///< Constructor
virtual ~TGelLane () {} ///< Dummy destructor
virtual void clear () ; ///< Clears the lane data
virtual void setMarker ( wxString _name ) ; ///< Sets a default marker
virtual void add ( int size , int weight = 1 ) ; ///< Adds a weightenend band
virtual void add ( int size , wxString title ) ; ///< Adds a labeled band
virtual void add ( int size , int weight , wxString title ) ; ///< Adds a band with weight and label
wxString name , type ;
wxArrayInt vi , vw ;
wxArrayString vs ;
double unit_volume ;
wxRect pos ; ///< The outer border of the lane
} ;
/** \class TVirtualGel
\brief The virtual gel module
*/
class TVirtualGel : public ChildBase
{
public :
TVirtualGel(wxWindow *parent, const wxString& title) ; ///< Constructor
virtual void initme () ; ///< Initialization
virtual wxString getName () ; ///< Returns the gel module name
virtual void OnPercent ( wxCommandEvent &ev ) ; ///< Gel percent setting change event handler
virtual void OnLabel ( wxCommandEvent &ev ) ; ///< Show labels event handler
virtual void OnMarker ( wxCommandEvent &ev ) ; ///< Show labels event handler
virtual void OnPrint ( wxCommandEvent &ev ) ; ///< Print event handler
TMyGelControl *right ; ///< Pointer to the actual gel
wxChoice *ch_percent , *ch_marker ; ///< Gel concentration choice box
wxCheckBox *cb_label ; ///< Show labels check box
vector <TGelLane> lanes ; ///< The lanes on the gel
wxString type ; ///< Gel type (unused yet)
double percent ; ///< Gel concentration
int cutoff , maxband ;
DECLARE_EVENT_TABLE()
} ;
/** \class TMyGelControl
\brief This class handles a single virtual gel for TVirtualGel, using TGelLane lanes
*/
class TMyGelControl : public wxControl
{
public :
TMyGelControl ( wxWindow *parent , int id = -1 ) ; ///< Constructor
virtual void OnDraw(wxDC& dc) ; ///< Draw event handler
virtual void OnPaint(wxPaintEvent& event) ; ///< Paint event handler
virtual void OnEvent(wxMouseEvent& event); ///< Mouse event handler
virtual void OnSaveAsBitmap(wxCommandEvent &event); ///< Save image handler
virtual void OnCopy(wxCommandEvent &event); ///< Copy event handler
virtual void OnPrint(wxCommandEvent &event); ///< Print event handler
virtual void OnDummy(wxCommandEvent& WXUNUSED(event)){}; ///< Dummy event handler
virtual int getLanePos ( int size , int height , float perc = 0 ) ;
virtual double fix_percent ( int size , float perc = 0 ) ;
virtual void drawBand ( wxDC &dc , TGelLane &lane , int band ) ; ///< Draws a gel band
bool printing ; ///< Is the current output going to printer?
TVirtualGel *vg ; ///< Pointer to the parent module
DECLARE_EVENT_TABLE()
} ;
class TRestrictionIdentifier : public TVirtualGel
{
public :
TRestrictionIdentifier(wxWindow *parent, const wxString& title) ; ///< Constructor
virtual void initme () ; ///< Initialization
virtual void OnDNAListChange(wxCommandEvent &event);
virtual void OnEnzymeListChange(wxCommandEvent &event);
virtual wxString getName () ; ///< Returns the gel module name
virtual void otherChildrenChanged () ;
private:
void listDNA () ;
void recalcEnzymes() ;
void addRestrictionLane ( wxString en , TVector *v ) ;
wxArrayInt getRestrictionFragments ( wxString en , TVector *v ) ;
bool check4separation ( wxString en ) ;
bool arrays_are_separate ( const wxArrayInt &a1 , const wxArrayInt &a2 ) ;
bool arrays_differ ( const wxArrayInt &a1 , const wxArrayInt &a2 , int bp , int percent ) ;
wxCheckListBox *dna_list ;
wxListBox *enzymes_list ;
wxChoice *bp_list , *percent_list , *group_list ;
vector <MyChild*> dna_items ;
bool running ;
DECLARE_EVENT_TABLE()
} ;
#endif
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