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/** \file
\brief Contains the TAminoAcids module class
*/
#ifndef _AMINO_ACIDS_H_
#define _AMINO_ACIDS_H_
#include "main.h"
#include "ChildBase.h"
#include <wx/splitter.h>
class TVector ;
class TURLtext ;
class TTestSuite ;
/** \brief The amino acid sequence display module
*/
class TAminoAcids : public ChildBase
{
public :
TAminoAcids(wxWindow *parent, const wxString& title) ; ///< Constructor
virtual ~TAminoAcids () ; ///< Destructor
virtual void initme () ; ///< Initialization
virtual wxString getName () ; ///< Returns the name of the TVector structure
virtual void showSequence () ; ///< Update the sequence display
virtual void showStat () ; ///< Show the sequence statistics box
virtual void OnMarkAll(wxCommandEvent& event); ///< "Mark all" event handler
virtual void OnFileSave(wxCommandEvent& WXUNUSED(event) ) ; ///< "Save sequence" event handler
virtual void OnFind(wxCommandEvent& event); ///< Find event handler
virtual void OnCut(wxCommandEvent& event); ///< "Cut" event handler
virtual void OnCopy(wxCommandEvent& event); ///< "Copy" event handler
virtual void OnPaste(wxCommandEvent& event); ///< "Paste" event handler
virtual void OnEditMode(wxCommandEvent& event); ///< "Toggle edit mode" event handler
virtual void OnEditName(wxCommandEvent& event); ///< "Edit name" event handler
virtual void OnPrint(wxCommandEvent& event); ///< Print event handler
virtual void OnAsNewFeature(wxCommandEvent& event); ///< "Selection as new feature" event handler
virtual void OnBlastAA(wxCommandEvent& event); ///< "Blast sequence" event handler
virtual void OnPhotometer(wxCommandEvent& event); ///< "Start photometer calculator" event handler
virtual void invokeVectorEditor ( wxString what = _T("") , int num = 0 , bool forceUpdate = false ) ; ///< "Edit sequence dialog" event handler
virtual void OnHorizontal ( wxCommandEvent& event ) ; ///< "Toggle horizontal/vertical" event handler
virtual void OnListBox ( wxCommandEvent& event ) ; ///< "List box choice" event handler
virtual void OnIP ( wxCommandEvent& event ) ; ///< "Inline plot dropdown box" event handler
virtual void OnBacktranslate ( wxCommandEvent& event ) ; ///< "Backtranslate to DNA" event handler
virtual void OnIPC ( wxCommandEvent& event ) ; ///< "IPC prediction" event handler
virtual void OnSpeak(wxCommandEvent& WXUNUSED(event)); ///< Speak sequence event handler
virtual void OnProteolysis(wxCommandEvent& WXUNUSED(event)); ///< Proteolysis event handler
virtual void OnFontsize(wxCommandEvent& event); ///< Fontsize event handler
virtual void OnDummy(wxCommandEvent& WXUNUSED(event)){}; ///< Dummy event handler
virtual void Undo(wxCommandEvent& event); ///< "Undo" event handler
virtual void Redo(wxCommandEvent& event); ///< "Redo" event handler (unused)
virtual void updateUndoMenu () ; ///< Updates the message for the undo function
virtual void handleListBox ( wxString t ) ; ///< Choses a new entry from the listbox
virtual bool HasUndoData () ;
// Variables
SequenceCanvas *sc , *sc2 ;
wxTextCtrl *stat ; ///< Pointer to the sequence statistics mini-display
TURLtext *desc ; ///< Pointer to the sequence description mini-display
wxSplitterWindow *hs , *vs ;
int from ; ///< Cursor position (sometimes...)
int miniDisplayOptions ; ///< Options for the mini-display
wxWindow *curDisplay ;
PlasmidCanvas *pc ; ///< Plasmid canvas, used in "scheme" mini-display
wxBoxSizer *v0 ;
protected :
virtual void updateToolbar () ; ///< Updates the toolbar to the current module
private :
friend class TTestSuite ;
wxListBox *lb ; ///< Pointer to the listbox with different "mini-displays"
wxBoxSizer *h1 , *v1 ;
wxChoice *inlinePlot ; ///< Inline plot dropdown box (in toolbar)
wxString lastLBsel ; ///< The last selected "mini-display", as the string from the listbox
wxChoice *fontsize ;
DECLARE_EVENT_TABLE()
} ;
#endif
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