1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596
|
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Python GetFEM interface
#
# Copyright (C) 2004-2020 Yves Renard, Julien Pommier.
#
# This file is a part of GetFEM
#
# GetFEM is free software; you can redistribute it and/or modify it
# under the terms of the GNU Lesser General Public License as published
# by the Free Software Foundation; either version 2.1 of the License, or
# (at your option) any later version.
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
# or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
# License for more details.
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.
#
############################################################################
""" This is a rough module for graphical vizualisation using
the getfem python interface. It may change in the future,
examples of use can be found in the tests/python directory
see for example demo_plasticity, demo_stokes_3D_tank_draw.py
It requires installation of the TVTK module from enthought
https://svn.enthought.com/enthought/wiki/TVTK
$Id$
"""
try:
from tvtk.api import tvtk
except:
print("\n\n** Could not load tvtk. Did you install it ?\n")
print(" ( https://svn.enthought.com/enthought/wiki/TVTK ) **\n\n")
raise
import sys
import numpy
import getfem
def gf_colormap(name):
if name == 'tripod':
s=64; s1=20; s2=25; s3=48; s4=55;
c = []
for i in range(1,s):
c1 = max(min((i-s1)/(s2-s1),1),0);
c2 = max(min((i-s3)/(s4-s3),1),0);
c += [(1-c2)*((1-c1)*0.7 + c1) + c2,
(1-c2)*((1-c1)*0.7) + c2*.8,
(1-c2)*((1-c1)*0.7) + c2*.2]
elif name == 'chouette':
c = [.8, 1, .8,
.7, .9, .4,
.3, .8, .2,
.1, .7, .4,
.2, 0.7, 1.0000,
.3, 0.3, 1.0000,
1.0, .8, .1,
1.0, .6, .1,
1.0, .45, .1,
1.0, 0.3, .1]
elif name == 'froid':
c = [.8, 1, .8,
.7, .9, .4,
.3, .8, .2,
.1, .7, .4,
.2, 0.7, 1.0000,
.3, 0.3, 1.0000]
elif name == 'tank':
c = [0, 0, 1,
0, .5, 1,
0, 1, .5,
0, 1, 0,
.5, 1, 0,
1, .5, 0,
1, .4, 0,
1, 0, 0,
1, .2, 0,
1, .4, 0,
1, .6, 0,
1, .8, 0];
elif name == 'earth':
c = [252, 233, 79, # Butter 1
247, 222, 30,
237, 212, 0, # Butter 2
216, 180, 0,
196, 160, 0, # Butter 3
138, 226, 52, # Chameleon 1
115, 210, 22, # Chameleon 2
78, 154, 6]
c = numpy.array(c) / 255.0;
c = numpy.array(c);
c.shape = (-1,3)
return c
def _getfem_to_tvtk_points(points):
(N,nbpt) = points.shape
if N<3:
points=numpy.concatenate((points,
numpy.zeros([3-N, nbpt])), axis=0)
points=numpy.array(points.transpose(), 'd')
return points
class FigureItem:
def __init__(self, fig):
self.fig = fig
self.sl = None
self.nrefine = 3
self.actors = None
self.show_edges = False
self.show_faces = True
self.use_scalar_bar = False
self.mapper = None
self.lookup_table = None
self.scalar_data = None
self.scalar_data_name = None
self.scalar_data_range = (0,1)
self.scalar_bar = None
self.vector_data = None
self.edges_color = None
self.edges_width = None
self.glyph_name = None
self.glyph_nb_pts = 1000
self.glyph_scale_factor = 1
self.tube_color = None
self.set_colormap('tripod')
def set_nrefine(self, nr):
self.nrefine = nr
def set_scalar_bar(self,v):
self.use_scalar_bar = v
def scalar_range(self, *args):
if (len(args)==0):
return self.scalar_data_range
if (len(args)==1):
self.scalar_data_range = (args[0][0], args[0][1])
else:
self.scalar_data_range = (args[0], args[1])
if self.mapper is not None:
self.mapper.scalar_range = self.scalar_data_range;
def build_from_mesh(self,m, **args):
dim = m.dim();
if (dim == 2):
self.sl=getfem.Slice(('none',),m,self.nrefine)
elif (dim == 3):
self.sl=getfem.Slice(('boundary',),m,self.nrefine);
else:
raise Exception('%d-D Meshes are not supported'%(dim,))
self.build_from_slice(self.sl, **args)
def build_from_slice(self, sl, **args):
self.sl = sl
self.show_faces = args.get('faces', True)
self.show_edges = args.get('edges', True)
self.edges_color = args.get('edges_color', (0.1, 0.1, 0.1))
self.edges_width = args.get('edges_width', 0.7)
self.glyph_name = args.get('glyph', None)
self.glyph_scale_factor = args.get('glyph_scale', 1.0)
self.glyph_nb_pts = args.get('glyph_nb_pts', 1000)
self.tube_color = args.get('tube_color',(1,1,1))
self.actor = None
def dfield_on_slice(self, data):
mf = None
if (isinstance(data, tuple)):
if (len(data) == 2):
mf = data[0]
U = data[1]
elif (len(data) == 1):
U = data[0]
else:
raise Exception("wrong data tuple..")
else:
U = data
if mf is not None:
return getfem.compute(mf, U, 'interpolate on', self.sl);
else:
return U
def set_scalar_data(self, data, name='scalars'):
self.scalar_data = self.dfield_on_slice(data)
self.scalar_data_name = name
#self.scalar_data_range = (min(self.scalar_data),
# max(self.scalar_data))
m = self.scalar_data.mean()
s = self.scalar_data.std()
self.scalar_data_range = (max(m - s, self.scalar_data.min()),
min(m + s, self.scalar_data.max()))
def set_vector_data(self, vdata, name='vectors'):
d = self.dfield_on_slice(vdata)
n = self.sl.nbpts()
if d.size % n != 0:
raise Exception("non consistent dimension for data")
if d.size > n:
d = d.transpose()
d.shape = (n,-1)
self.vector_data = d
if self.glyph_name is None:
self.glyph_name = 'default'
def deformation_from_mf(self, mf, U, scale):
P=self.sl.pts()
deform = getfem.compute(mf, U, 'interpolate on', self.sl)
try:
scale=float(scale)
except ValueError:
if scale.endswith('%'):
a = max(abs(P.max()),abs(P.min()),1e-10);
b = max(abs(deform.max()),abs(deform.min()));
scale = float(scale[:-1]) * 0.01 * a/b;
P=P + scale * deform
self.sl.set_pts(P)
#print("deformation!", repr(mf), U.size(), repr(self.sl), "\nDEFORM=",self.deform,"\n")
sys.stdout.flush()
def set_colormap(self, c):
if isinstance(c,str):
lut = tvtk.LookupTable()
c=gf_colormap(c)
lut.number_of_table_values=c.shape[0]
for i in range(c.shape[0]):
lut.set_table_value(i,c[i,0],c[i,1],c[i,2],1)
elif isinstance(c, tvtk.LookupTable):
lut = c
else:
raise Exception("expected a string or a tvtk.LookupTable")
self.lookup_table = lut
if (self.mapper is not None):
self.mapper.lookup_table = self.lookup_table
if (self.scalar_bar is not None):
self.scalar_bar.lookup_table = self.lookup_table
def vtk_actors(self):
if (self.actors is None):
self.actors = []
points=_getfem_to_tvtk_points(self.sl.pts())
(triangles,cv2tr)=self.sl.splxs(2);
triangles=numpy.array(triangles.transpose(), 'I');
data = tvtk.PolyData(points=points, polys=triangles)
if self.scalar_data is not None:
data.point_data.scalars = numpy.array(self.scalar_data)
if self.vector_data is not None:
data.point_data.vectors = numpy.array(self.vector_data)
if self.glyph_name is not None:
mask = tvtk.MaskPoints()
mask.maximum_number_of_points = self.glyph_nb_pts
mask.random_mode = True
mask.input = data
if self.glyph_name == 'default':
if self.vector_data is not None:
self.glyph_name = 'arrow'
else:
self.glyph_name = 'ball'
glyph = tvtk.Glyph3D()
glyph.scale_mode = 'scale_by_vector'
glyph.color_mode = 'color_by_scalar'
#glyph.scale_mode = 'data_scaling_off'
glyph.vector_mode = 'use_vector' # or 'use_normal'
glyph.input = mask.output
if self.glyph_name == 'arrow':
glyph.source = tvtk.ArrowSource().output
elif self.glyph_name == 'ball':
glyph.source = tvtk.SphereSource().output
elif self.glyph_name == 'cone':
glyph.source = tvtk.ConeSource().output
elif self.glyph_name == 'cylinder':
glyph.source = tvtk.CylinderSource().output
elif self.glyph_name == 'cube':
glyph.source = tvtk.CubeSource().output
else:
raise Exception("Unknown glyph name..")
#glyph.scaling = 1
#glyph.scale_factor = self.glyph_scale_factor
data = glyph.output
if self.show_faces:
## if self.deform is not None:
## data.point_data.vectors = array(numarray.transpose(self.deform))
## warper = tvtk.WarpVector(input=data)
## data = warper.output
## lut = tvtk.LookupTable()
## lut.hue_range = 0.667,0
## c=gf_colormap('tripod')
## lut.number_of_table_values=c.shape[0]
## for i in range(0,c.shape[0]):
## lut.set_table_value(i,c[i,0],c[i,1],c[i,2],1)
self.mapper = tvtk.PolyDataMapper(input=data);
self.mapper.scalar_range = self.scalar_data_range;
self.mapper.scalar_visibility = True
# Create mesh actor for display
self.actors += [tvtk.Actor(mapper=self.mapper)]
if self.show_edges:
(Pe, E1, E2)=self.sl.edges();
if Pe.size:
E = numpy.array(numpy.concatenate((E1.transpose(),
E2.transpose()),
axis=0), 'I')
edges=tvtk.PolyData(points=_getfem_to_tvtk_points(Pe),
polys=E)
mapper_edges = tvtk.PolyDataMapper(input=edges);
actor_edges = tvtk.Actor(mapper=mapper_edges)
actor_edges.property.representation = 'wireframe'
#actor_edges.property.configure_traits()
actor_edges.property.color = self.edges_color
actor_edges.property.line_width = self.edges_width
actor_edges.property.ambient = 0.5
self.actors += [actor_edges];
if self.sl.nbsplxs(1):
# plot tubes
(seg,cv2seg)=self.sl.splxs(1)
seg=numpy.array(seg.transpose(),'I')
data=tvtk.Axes(origin=(0,0,0), scale_factor=0.5, symmetric=1)
data=tvtk.PolyData(points=points, lines=seg)
tube = tvtk.TubeFilter(radius=0.4, number_of_sides=10,
vary_radius='vary_radius_off',
input=data)
mapper = tvtk.PolyDataMapper(input=tube.output)
actor_tubes = tvtk.Actor(mapper=mapper)
#actor_tubes.property.representation = 'wireframe'
actor_tubes.property.color = self.tube_color
#actor_tubes.property.line_width = 8
#actor_tubes.property.ambient = 0.5
self.actors += [actor_tubes]
if self.use_scalar_bar:
self.scalar_bar = tvtk.ScalarBarActor(title=self.scalar_data_name,
orientation='horizontal',
width=0.8, height=0.07)
self.scalar_bar.position_coordinate.coordinate_system = 'normalized_viewport'
self.scalar_bar.position_coordinate.value = 0.1, 0.01, 0.0
self.actors += [self.scalar_bar]
if (self.lookup_table is not None):
self.set_colormap(self.lookup_table)
return self.actors
class Figure:
def __init__(self, gui='tvtk'):
self.actors = []
self.gui = None
self.renderer = None
self.items = []
if gui == 'tvtk':
self._create_tvtk_window()
else:
self._create_ivtk_window()
self.renderer.background = (1,1,1)
def _create_tvtk_window(self, size=(500,500)):
# create a renderer
self.renderer = tvtk.Renderer()
# create a render window and hand it the renderer
self.render_window = tvtk.RenderWindow(size=size)
self.render_window.add_renderer(self.renderer)
# create interactor and hand it the render window
# This handles mouse interaction with window.
self.interactor = tvtk.RenderWindowInteractor(render_window=self.render_window)
self.gui = None
def _create_ivtk_window(self, size=(800,800)):
from enthought.tvtk.tools import ivtk
from enthought.pyface.api import GUI
# Create a GUI instance.
self.gui = GUI()
window = ivtk.IVTKWithCrustAndBrowser(size=size) # Size is optional.
# Open the window.
window.open()
self.renderer = window.scene
self.render_window = window
def show_mesh(self, m, **args):
it = FigureItem(self)
it.build_from_mesh(m, **args)
self.actors += it.vtk_actors()
self.items.append(it)
def show_mesh_fem(self, mf, **args):
it = FigureItem(self)
it.build_from_mesh(mf.linked_mesh(), **args)
if 'deformation' in args:
it.deformation_from_mf(args.get('deformation_mf',mf),
args['deformation'],
args.get('deformation_scale','10%'));
if 'data' in args:
it.set_scalar_data(args.get('data'),
args.get('scalar_label', 'data'));
it.set_scalar_bar(args.get('scalar_bar', False))
if 'vdata' in args:
it.set_vector_data(args.get('vdata'))
self.actors += it.vtk_actors()
self.items.append(it)
it.set_colormap(args.get('colormap','earth'));
def show_slice(self, sl, **args):
it = FigureItem(self)
it.build_from_slice(sl, **args)
if 'data' in args:
it.set_scalar_data(args.get('data'),
args.get('scalar_label', 'data'));
it.set_scalar_bar(args.get('scalar_bar', False))
if 'vdata' in args:
it.set_vector_data(args.get('vdata'))
self.actors += it.vtk_actors()
self.items.append(it)
it.set_colormap(args.get('colormap','chouette'));
def scalar_range(self, *args):
if len(self.items):
if len(args)==0:
return self.items[-1].scalar_range()
else:
for i in self.items:
i.scalar_range(*args)
else:
raise Exception("plot something before changing its scalar range!")
## def scalar_bar(self):
## if len(self.items):
## self.items[-1].set_scalar_bar(True)
def set_colormap(self, c):
if (len(self.items)):
self.items[-1].set_colormap(c)
def show(self, mf, **args):
if isinstance(mf, getfem.MeshFem):
self.show_mesh_fem(mf, **args)
elif isinstance(mf, getfem.Mesh):
self.show_mesh(mf, **args)
elif isinstance(mf, getfem.Slice):
self.show_slice(mf, **args)
else:
raise TypeError("argument must be a drawable getfem object")
def loop(self):
for a in self.actors:
self.renderer.add_actor(a)
if self.gui:
self.renderer.reset_zoom()
self.gui.start_event_loop()
else:
self.interactor.start()
def export_picture(self, filename):
w2if = tvtk.WindowToImageFilter()
w2if.magnification = 2
w2if.input = self.render_window
ex = tvtk.PNGWriter()
ex.file_name = filename
ex.input = w2if.output
ex.write()
##mf=getfem.MeshFem('load','tripod.mf');
##m=mf.linked_mesh()
##mfvm=getfem.MeshFem('load','tripod.mfe',m);
##U = numarray.fromfile('tripod.U','d')
##VM = numarray.fromfile('tripod.VM','d')
##fig = Figure()
##fig.show(mfvm, data=VM, deformation_mf=mf, deformation=U,
## scalar_bar=True, scalar_label='Von Mises Stress')
##fig.set_colormap('chouette')
##fig.loop()
##sys.exit(1)
###plot_mesh(m);
###def plot_mesh(m):
##if m:
## p = tvtk.Property(representation='wireframe')
## p.representation = 's'
## p.representation
## # -> 'surface'
## #p.configure_traits()
## sl=getfem.Slice(('boundary',),m,2);
## (Pe, E1, E2)=sl.edges();
## points=sl.pts(); points.transpose();
## points=array(points);
## (triangles,cv2tr)=sl.splxs(2);
## triangles.transpose();
## triangles=array(triangles);
## mesh = tvtk.PolyData(points=points, polys=triangles)
## Pe.transpose();
## E1.transpose()
## edges=tvtk.PolyData(points=array(Pe),polys=array(E1))
## print(mesh.get())
## #data = array([[0,0,0,10], [1,0,0,20],
## # [0,1,0,20], [0,0,1,30]], 'f')
## #triangles = array([[0,1,3], [0,3,2],
## # [1,2,3], [0,2,1]])
## #points, temperature = data[:,:3], data[:,-1]
## #mesh = tvtk.PolyData(points=points, polys=triangles)
## #mesh.point_data.scalars = temperature
## ### TVTK PIPELINE
## if 0:
## # create a renderer
## renderer = tvtk.Renderer()
## # create a render window and hand it the renderer
## render_window = tvtk.RenderWindow(size=(400,400))
## render_window.add_renderer(renderer)
## # create interactor and hand it the render window
## # This handles mouse interaction with window.
## interactor = tvtk.RenderWindowInteractor(render_window=render_window)
## else:
## # Create a GUI instance.
## gui = GUI()
## # Create and open an IVTK application window that has an embedded TVTK
## # pipeline browser and an interactive Python interpreter shell via
## # PyCrust. If you don't want all these you can choose between the
## # following classes in ivtk -- IVTK, IVTKWithCrust, IVTKWithBrowser
## # and IVTKWithCrustAndBrowser.
## window = ivtk.IVTKWithCrustAndBrowser(size=(800,600)) # Size is optional.
## # Open the window.
## window.open()
## viewer = window
## renderer = viewer.scene
## # Set the mapper to scale temperature range
## # across the entire range of colors
## mapper = tvtk.PolyDataMapper(input=mesh);
## mapper_edges = tvtk.PolyDataMapper(input=edges);
## print(mapper)
## #mapper = tvtk.PolyDataMapper(input=mesh)
## #mapper.scalar_range = min(temperature), max(temperature)
## # Create mesh actor for display
## actor = tvtk.Actor(mapper=mapper)
## actor_edges = tvtk.Actor(mapper=mapper_edges)
## actor_edges.property.representation = 'wireframe'
## # Create a scalar bar
## scalar_bar = tvtk.ScalarBarActor(title="Temperature",
## orientation='horizontal',
## width=0.8, height=0.17,
## lookup_table = mapper.lookup_table)
## scalar_bar.position_coordinate.coordinate_system = 'normalized_viewport'
## scalar_bar.position_coordinate.value = 0.1, 0.01, 0.0
## # Use the ScalarBarWidget so we can drag the scalar bar around.
## #sc_bar_widget = tvtk.ScalarBarWidget(interactor=interactor,
## # scalar_bar_actor=scalar_bar)
## # Now add the actors to the renderer and start the interaction.
## renderer.add_actor(actor)
## renderer.add_actor(actor_edges)
## #interactor.initialize()
## # Enable the widget so the scalar bar can be seen. Press 'i' to
## # disable the widget.
## #sc_bar_widget.enabled = True
## #interactor.start()
## gui.start_event_loop()
## print("finished!")
## #f=mlab.figure()
## #f.add(mlab.TriMesh(points,triangles))
|