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#!/bin/bash
if [ $# -ne 6 ]; then
echo "Usage: $0 <outfile> <operation> <version> <variable> <range> <nrepl>" > /dev/stderr
echo " outfile: will be overwritten if exists" > /dev/stderr
echo " operation: (mergelinear/convert) ../bin/gfapy-<operation> <gfafile> will be called" > /dev/stderr
echo " version: (gfa1/gfa2) gfa version" > /dev/stderr
echo " variable: (segments/connectivity)" > /dev/stderr
echo " range: (all/fast/slow)" > /dev/stderr
echo " nrepl: (e.g. 3) number of replicates" > /dev/stderr
exit 1
fi
outfile=$1
operation=$2
version=$3
variable=$4
range=$5
nrepl=$6
if [ $variable == "segments" ]; then
if [ $range == "fast" ]; then
nsegments="1000 2000 4000"
elif [ $range == "slow" ]; then
nsegments="8000 16000 32000 64000 128000 256000 512000 1024000 2048000"
elif [ $range == "all"]; then
nsegments="1000 2000 4000 8000 16000 32000 64000 128000 256000 512000 1024000 2048000"
fi
else
nsegments=4000
fi
if [ $variable == "connectivity" ]; then
if [ $range == "fast" ]; then
multipliers="2 4 8"
elif [ $range == "slow" ]; then
multipliers="16 32 64 128 256"
elif [ $range == "all"]; then
multipliers="2 4 8 16 32 64 128 256"
fi
else
multipliers=2
fi
mkdir -p benchmark_results
rm -f $outfile
echo "# hostname: $HOSTNAME" > $outfile
echo "### benchmark data:" >> $outfile
for ((replicate=1;replicate<=nrepl;++replicate)); do
for i in $nsegments; do
for m in $multipliers; do
fname="benchmark_results/${i}_e${m}x.$replicate.${version}"
bmout="$fname.$operation.benchmark"
rm -f $bmout
if [ ! -e $fname ]; then
./gfapy-randomgraph --segments $i -g $version \
--dovetails-per-segment $m --with-sequence > $fname
fi
./gfapy-benchmark-collectdata ../bin/gfapy-$operation $fname \
1> /dev/null 2> $bmout
elapsed=$(grep -P -o "(?<=) [^ ]*(?=elapsed)" $bmout)
memory=$(grep -P -o "(?<=VmHWM: ).*" $bmout)
filesize=( $(ls -ln $fname) );filesize=${filesize[4]}
echo -e "gfapy-$operation\t$version\t$i\t$m\t$replicate\t$elapsed\t$memory\t$filesize" >> $outfile
done
done
done
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