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import gfapy
import unittest
from .extension import *
class TestAPIExtensions(unittest.TestCase):
def test_extensions(self):
g = gfapy.Gfa(version="gfa2", vlevel=0)
MetagenomicAssignment(["M", "*","N12","C","SC:i:20"])
sA = gfapy.Line("S\tA\t1000\t*")
g.append(sA)
tB12 = gfapy.Line("T\tB12_c")
g.append(tB12)
m1 = gfapy.Line("M\t1\ttaxon:123\tA\tSC:i:40\txx:Z:cjaks536")
g.append(m1)
m2 = gfapy.Line("M\t2\ttaxon:123\tB\txx:Z:cga5r5cs")
g.append(m2)
sB = gfapy.Line("S\tB\t1000\t*")
g.append(sB)
mx = gfapy.Line("M\t*\tB12_c\tB\tSC:i:20")
g.append(mx)
t123 = gfapy.Line(
"T\ttaxon:123\tUL:Z:http://www.taxon123.com")
g.append(t123)
self.assertEqual(MetagenomicAssignment, m1.__class__)
self.assertEqual(Taxon, tB12.__class__)
self.assertEqual("1", m1.mid)
assert(gfapy.is_placeholder(mx.mid))
self.assertEqual(t123, m1.tid)
self.assertEqual(sA, m1.sid)
self.assertEqual("cjaks536", m1.xx)
self.assertEqual([m2,mx], sB.metagenomic_assignments)
self.assertEqual([m1,m2], t123.metagenomic_assignments)
self.assertEqual("taxon:123", t123.tid)
self.assertEqual("http://www.taxon123.com", t123.UL)
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