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import unittest
import gfapy
class TestCigar(unittest.TestCase):
def test_from_string_nonempty(self):
self.assertEqual(gfapy.CIGAR([gfapy.CIGAR.Operation(12, "M"),
gfapy.CIGAR.Operation( 1, "D"),
gfapy.CIGAR.Operation( 2, "I")]),
gfapy.CIGAR._from_string("12M1D2I"))
def test_from_string_empty(self):
self.assertEqual(gfapy.Placeholder, gfapy.CIGAR._from_string("*"))
def test_from_string_invalid(self):
with self.assertRaises(gfapy.FormatError):
gfapy.CIGAR._from_string("12x1D2I")
def test__str__noempty(self):
self.assertEqual("12M1D2I",
str(gfapy.CIGAR([gfapy.CIGAR.Operation(12, "M"),
gfapy.CIGAR.Operation( 1, "D"),
gfapy.CIGAR.Operation( 2, "I")])))
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