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import gfapy
import unittest
class TestInternalsFieldParser(unittest.TestCase):
def test_parse_gfa_tag(self):
o = "AA:i:1"
self.assertEqual(["AA","i","1"], gfapy.Field._parse_gfa_tag(o))
with self.assertRaises(gfapy.FormatError):
gfapy.Field._parse_gfa_tag("1A:A:A")
with self.assertRaises(gfapy.FormatError):
gfapy.Field._parse_gfa_tag("_A:A:A")
with self.assertRaises(gfapy.FormatError):
gfapy.Field._parse_gfa_tag("A:A:A")
with self.assertRaises(gfapy.FormatError):
gfapy.Field._parse_gfa_tag("AAA:A:A")
with self.assertRaises(gfapy.FormatError):
gfapy.Field._parse_gfa_tag("AA:C:1")
with self.assertRaises(gfapy.FormatError):
gfapy.Field._parse_gfa_tag("AA:AA:1")
with self.assertRaises(gfapy.FormatError):
gfapy.Field._parse_gfa_tag("AA:a:1")
def test_parse_gfa_field_A(self):
self.assertEqual("1", gfapy.Field._parse_gfa_field("1", "A"))
def test_parse_gfa_field_i(self):
self.assertEqual(12, gfapy.Field._parse_gfa_field("12", "i"))
def test_parse_gfa_field_f(self):
self.assertEqual(1.2, gfapy.Field._parse_gfa_field("1.2", "f"))
def test_parse_gfa_field_Z(self):
self.assertEqual("1.2", gfapy.Field._parse_gfa_field("1.2", "Z"))
def test_parse_gfa_field_H(self):
self.assertEqual(gfapy.ByteArray([26]),
gfapy.Field._parse_gfa_field("1A", "H"))
def test_parse_gfa_field_B(self):
self.assertEqual([12,12,12],
gfapy.Field._parse_gfa_field("c,12,12,12", "B"))
self.assertEqual([1.2,1.2,1.2],
gfapy.Field._parse_gfa_field("f,1.2,1.2,1.2", "B"))
def test_parse_gfa_field_J(self):
self.assertEqual({"1" : 2},
gfapy.Field._parse_gfa_field("{\"1\":2}", "J"))
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