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BLASTN 2.0MP-WashU [23-Sep-2001] [linux-i686-ILP32F64 14:26:09 27-Sep-2001]
Copyright (C) 1996-2001 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2001) http://blast.wustl.edu
Notice: this program and its default parameter settings are optimized to find
nearly identical sequences rapidly. To identify weak similarities encoded in
nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= NM_009315
(5878 letters)
Database: NM_005641
1 sequences; 52,737,903,427,583 total letters.
Searching done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
NM_005641 1405 0. 12
>NM_005641
Length = 12,278
Plus Strand HSPs:
Score = 1405 (216.9 bits), Expect = 0., Sum P(12) = 0.
Identities = 461/635 (72%), Positives = 461/635 (72%), Strand = Plus / Plus
Query: 5219 GTCTTGA-CCATCCATTGC-ACTGGG-GA-CTACAAGGGAAGGTGGGAGTGGAGGGCATG 5274
|||| | |||| | | || ||| || ||||| |||| || ||| || |
Sbjct: 11597 GTCTCCAGCCATAGCTGTCTACAGGGTGAACTACA--GGAACAACTT-GTTCAGG-CAGG 11652
Query: 5275 TGTCAACAGTAGATACCTGGAAAAGGATTCTGGGGGA-AGCAAGGACA-A---CATGAC- 5328
| | | || ||| | | || |||||||| || ||| || | || |
Sbjct: 11653 GAGCGAGTGAAGCGTCCTCGCCA-GGCCTCTGGGGGGCAGGGAGGGCACAGGGCAAGCGG 11711
Query: 5329 CCTAGACCCTCCTTTCTCGCTCAGGTTCTGTCCCTCAGCACCTCAGCTCCTGGCTCAGGC 5388
||| | | |||||||| | ||||| ||||||||||||||||| || || ||||||||
Sbjct: 11712 CCT-GCCTTTCCTTTCTATC-CAGGTCCTGTCCCTCAGCACCTCGGCCCCCGGCTCAGGT 11769
Query: 5389 TCTACTACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGCTG 5448
|| || || || || || ||||||||||| || |||||||||||||||||||||||| ||
Sbjct: 11770 TCCACCACCACTTCGCCCGTCACCACCACCGTCCCCAGCGTGCAGCCCATCGTCAAGTTG 11829
Query: 5449 GTCTCCACTGCTACCACTGCACCCCCAAGCACAGC-CCCTGCTGGTTCTGGCAGTGTTCA 5507
|||||||| || ||||| |||||||| ||||| || |||| ||||| |||| ||||| ||
Sbjct: 11830 GTCTCCACCGCCACCACCGCACCCCCCAGCACTGCTCCCT-CTGGTCCTGGGAGTGTCCA 11888
Query: 5508 GAAATACATTGTGGTCTCTCTTCCCCCAACAGGGGAAGGCAAAGGAGGCCCTCCTTCTCA 5567
||| ||||| |||||||| ||||||||||||||||| |||||||||||||| | || ||
Sbjct: 11889 GAAGTACATCGTGGTCTCACTTCCCCCAACAGGGGAGGGCAAAGGAGGCCCCACCTCCCA 11948
Query: 5568 TCCTTCTCCAGTCCCCCCTTCATCTTCTTCACCATCCCCACTTGGGGGAAGTACCCTCTG 5627
|||||||||||| || || | | || || || |||||||| | || ||| |||| ||
Sbjct: 11949 TCCTTCTCCAGTTCCTCCCCCGGCATCGTCCCCGTCCCCACTCAGCGGCAGTGCCCTTTG 12008
Query: 5628 TGGGGGGAAGCAGGAAGCTGGGGACAGCCCCCCTCCAGCTCCAGGGACTCCAAAGGCTAA 5687
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 12009 TGGGGGGAAGCAGGAGGCTGGGGACAGTCCCCCTCCAGCTCCAGGGACTCCAAAAGCCAA 12068
Query: 5688 TGGCTCGCAGCCTA-CTGGACCTGGCTCTCCCCAGCCTGCTCTGTGATGTGTCACATGT- 5745
|||||| ||||| | || || ||||| || |||||||||| |||||| ||| ||
Sbjct: 12069 TGGCTCCCAGCCCAACT---CC-GGCTCCCCTCAGCCTGCTCCGTGATGCTCCACCTGCC 12124
Query: 5746 -GCTGACC--TCCTCTCTTGTGCAGATTCCTACACAC-T-CAA--ACA-ACCTGTGAGGG 5797
|| | | | | | |||||| ||||||| | || ||| || || |
Sbjct: 12125 AGCCCCCGGATTCCCACACATGCAGACATGTACACACGTGCACGTACACACATGCATGCT 12184
Query: 5798 AGGAAGGAGGAAAGGTTTTCCCCAGTGACTTTCTT 5832
| | | |||| | || | || ||| |||
Sbjct: 12185 CGCTAAGCGGAAGGAAGTTGTAGATTG-CTTCCTT 12218
Score = 1122 (174.4 bits), Expect = 0., Sum P(12) = 0.
Identities = 304/387 (78%), Positives = 304/387 (78%), Strand = Plus / Plus
Query: 1719 AGTTTTCTTTTTCAAGCCTGTCTC-CCATTTCACACAGGAAAAGAGAAGAAGGCACCTCC 1777
|| ||||||| ||| || || ||| | |||||||| |||||||||||||| || ||
Sbjct: 7067 AGCTTTCTTTGTCAGACCCACCTTTCCAAT-CACACAGGGAAAGAGAAGAAGGCGCCGCC 7125
Query: 1778 CTTGCTGGAGGGGGCCCCTTTCCGCCTGAAGCCCCGCAGCATCCATGAGCTGTCTGTGGA 1837
|||||||||||||||||| || || ||||||||||| |||||||| ||| ||||||||||
Sbjct: 7126 CTTGCTGGAGGGGGCCCCCTTGCGACTGAAGCCCCGGAGCATCCACGAGTTGTCTGTGGA 7185
Query: 1838 GCAGCAGCTGTATTACAAGGAGATCACGGAAGCCTGTGTGGGATCCTGTGAGGCCAAGAG 1897
||||||||| || |||||||||||||| || ||||| ||||| ||||| |||||||||||
Sbjct: 7186 GCAGCAGCTCTACTACAAGGAGATCACCGAGGCCTGCGTGGGCTCCTGCGAGGCCAAGAG 7245
Query: 1898 AGCGGTAAGCCTGCCCTCTGGCTC-CCTTCGGTCAGAGAAAGAATCTTCCTGGAA-CAAT 1955
||||| || ||| | ||| || | | | |||| | || |||||| | |
Sbjct: 7246 GGCGGTGAGGGC-CCCACCAGCTTGCCCTGGCCCTGAGAC-GCCTCCTCCTGGGGGCCCT 7303
Query: 1956 GGGAGTTT-TCAACAG-TCAATGGCCCCACCTGACTCACTGCCC-CCTACCACAGGAAGC 2012
|| || || || || |||||||||||| || ||| ||| |||||||||||
Sbjct: 7304 ATGAATTGCTCCCCACATCCCAC-CCCCACCTGACTGGCTTCCCTCCTCCCACAGGAAGC 7362
Query: 2013 TCTGCAGAGCATTGCCACGGACCCAGGGCTCTATCAGATGCTACCACGGTTCAGTACCTT 2072
||||| ||||||||||||||||| || || ||||||||||| |||||||||||||||||
Sbjct: 7363 CCTGCAAAGCATTGCCACGGACCCTGGACTGTATCAGATGCTGCCACGGTTCAGTACCTT 7422
Query: 2073 CATCTCAGAGGGGGTGAGAGAACTGGG 2099
||||| ||||||||||||| | || |
Sbjct: 7423 TATCTCGGAGGGGGTGAGAGCA-TGAG 7448
Score = 944 (147.7 bits), Expect = 0., Sum P(12) = 0.
Identities = 406/613 (66%), Positives = 406/613 (66%), Strand = Plus / Plus
Query: 664 ATTTGGGGGGACTTGAAGGAGACAGGCGGCTTTAGAGTGGGGAGACAATGCACGTGTGGC 723
|| | | || || |||||||||||| | ||| | | || | | | | | |
Sbjct: 5482 ATGTCGAGGTGATTTGGGGAGACAGGCGGGGGGGGGGTGAGACGCCA-T-C-CTTCAG-C 5537
Query: 724 CATGCCTCCCTTGCGCTGTTTCTCATGTCCTTCTCTGTCTCTCTCCTGGTGTAGCCACTG 783
|| | |||| | ||| | || | || | | |||||||||| |||||||
Sbjct: 5538 CAGGTCTCCTCCG-GCTCCCT-TCTTACCCATGCCC--CTCTCTCCTGCCACAGCCACTC 5593
Query: 784 TATGGCTTCCATGCTCAGGAGTTCATCCCTTTCCGGTTTGCCTCTGGCGGGGGCCGGGAG 843
||||||||||| || ||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct: 5594 TATGGCTTCCACGCCCAGGAGTTCATTCCTTTCCGCTTCGCCTCTGGTGGGGGCCGGGAG 5653
Query: 844 CTGTACTTCTATGAAGAGAAGGAAGTGGACCTGAGTGACATCATCAACACCCCTCTGCCT 903
|| ||||||||||| |||||||| || || ||||| ||||||||||| |||||||||||
Sbjct: 5654 CTTTACTTCTATGAGGAGAAGGAGGTTGATCTGAGCGACATCATCAATACCCCTCTGCCC 5713
Query: 904 CGGGTGCCTCTGGATGTCTGCCTCAAAGGTGGAGGGAGGGTAGAGCTGGGTGCCCAGGGA 963
|||||||| ||||| ||||||||||||||| | ||||||| ||||| ||||| | |||||
Sbjct: 5714 CGGGTGCCCCTGGACGTCTGCCTCAAAGGTTGGGGGAGGGGAGAGCAGGGTGGC-AGGGA 5772
Query: 964 GGAGGGGAAGCAAG-C-G-TGTGACT-GG---GAGGAACTTCACAAGAGAAGAAAGAAAC 1016
|||||| ||| | | | | |||| | || ||||| | |||||| |||||||| |
Sbjct: 5773 GGAGGGAAAGGAGGACAGATGTGTGTAGGTGTGAGGAGCCTCACAATAGAAGAAAAGCTC 5832
Query: 1017 A-TCCAATATGTGAA-TGGCAAGAAGGGGACTAGGAAGGGGAATACAT-CTTCCTCCGTC 1073
| | | || || | | ||| | || |||| ||| ||||| | |
Sbjct: 5833 AGTGTGAGATCCCTGGTGAGTTGCAAGGGGAGCAGGAGTGGAA-ACACGCTTCCATAG-C 5890
Query: 1074 A-GGGTCGGCTTCCCAGTGTACATACCCAGAACTCAGCTTGACGTCTTCTTTACAGCTCA 1132
| ||| | || |||| ||| ||| | | | | | | | | || | | |
Sbjct: 5891 ATGGGGCAACTCCCCAATGTCCATGCGTGGCAATTCACCTT--GACACCTGC-CTTC-C- 5945
Query: 1133 TTGGCTAAGCATCGAAGGCTGC-CAGCCAGCTATACCAGAGAATCCACCCCCAGGTAAGG 1191
||| | ||| || ||||| || | || | |||| | | | |||| | ||
Sbjct: 5946 TTG-C--AGC-TCATTGGCTGAGCATCGAGGGCTGCCAGCCAG-CTATCCCCGAG-AACC 5999
Query: 1192 TTTTCCTTGCCCCTTAATCTCCTT-CCCCATCC-CTGGTCCTCTAGAGCTCCTCCTACCT 1249
|| || ||| |||| | ||||| || |||| |||| | | | | | |||
Sbjct: 6000 CGC-CC---CCAGGTAACCTCCATGCCCCACCCTCTGGGTCTCTGGGTCCCTTTCC-CCT 6054
Query: 1250 TCTCATCACTCCT 1262
|| | || | |||
Sbjct: 6055 TC-CTTC-CACCT 6065
Score = 848 (133.3 bits), Expect = 0., Sum P(12) = 0.
Identities = 230/292 (78%), Positives = 230/292 (78%), Strand = Plus / Plus
Query: 4851 ATGTTAACATTTTCTTCCTGTGTCTGTTCTCTTCATAGCCTCGGCCCACACTGACCCTTT 4910
||| | || || | ||| | || ||||| | |||| |||||||| |||||||| |
Sbjct: 11198 ATGGTGCCACTTCCC-CCTTTC-CTCTTCTCCCCGCAGCCCCGGCCCACGCTGACCCTCT 11255
Query: 4911 CACAGGCCCCTCAGCCAGGCCCTCGCACGCCTGGCTTATTGAAGGTCCCTGGCTCCATTG 4970
| |||||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||| |
Sbjct: 11256 CGCAGGCCCCACAGCCTGGCCCTCGCACCCCTGGCTTGCTGAAGGTTCCTGGCTCCATCG 11315
Query: 4971 C-CTTGCCTGTTCAGACACTGGTGTCTGCGAGAGCTGCTGCTCCTCCTCAGCCTTCTCCT 5029
| ||| ||||| ||||||||||||||||| |||| ||||| || || |||||||| |||
Sbjct: 11316 CACTT-CCTGTCCAGACACTGGTGTCTGCACGAGCGGCTGCCCCACCACAGCCTTCCCCT 11374
Query: 5030 CCTCCAACCAAGTTTATTGTAATGTCCTCATCTTCCAGTGCCTCATCAACCCAGCAGGTA 5089
|||||||||||||||||||||||||| || || ||||| ||| |||| ||||||||||||
Sbjct: 11375 CCTCCAACCAAGTTTATTGTAATGTCATCGTCCTCCAGCGCCCCATCCACCCAGCAGGTA 11434
Query: 5090 TGTGGAGCCA-GGGTGAGGG-G--TGTGATGCCCCTGGGGAAACCTCCAAGC 5137
|| |||| ||| |||| | | || | |||||| | |||| |||
Sbjct: 11435 TGCAGAGCTGTGGGACAGGGAGCATCTGGAGGGCCTGGGTTA-CCTCAGAGC 11485
Score = 834 (131.2 bits), Expect = 0., Sum P(12) = 0.
Identities = 292/414 (70%), Positives = 292/414 (70%), Strand = Plus / Plus
Query: 2375 ATCAGACTCA-CTGACAGGGCCTGGTCTCTCTCAGGTGCATGAGCTCATTCCAGCAGTAA 2433
| |||| ||| ||| | | ||| |||| || |||| |||||||| |||||||| || |
Sbjct: 8002 ACCAGAATCAGCTGTCCCGCCCTT-TCTCCCTTAGGTCCATGAGCTGATTCCAGCTGTGA 8060
Query: 2434 TGACCTGCATTGTGAGTAGACAGCTGTGCTTGCGGCCAGATGTGGACAATCACTGGGCAC 2493
|||||||||| ||||| |||||| ||||| |||| |||||||||||||||||||||||||
Sbjct: 8061 TGACCTGCATCGTGAGCAGACAGTTGTGCCTGCGACCAGATGTGGACAATCACTGGGCAC 8120
Query: 2494 TCCGGGATTTTGCTGCCCGTCTAGTGGCCCAAATCTGTAAGCATTTCAGCACAACCACCA 2553
|||| || ||||||||||| || |||||||| ||||| |||||||| ||||||||||| |
Sbjct: 8121 TCCGAGACTTTGCTGCCCGCCTGGTGGCCCAGATCTGCAAGCATTTTAGCACAACCACTA 8180
Query: 2554 ACAACATCCAATCCCGAATCACTAAGACCTTTACCAAGGTAAGCCCCAAAAATGTTATCA 2613
|||||||||| ||||| ||||| |||||||| |||||||| |||| |||| | | |
Sbjct: 8181 ACAACATCCAGTCCCGGATCACCAAGACCTTCACCAAGGTGAGCCAGGAAAACTTGAGCG 8240
Query: 2614 A-ATGATGCAAACCACCCCTTTAGGGCTACCTGTGAGAGAGAGAGCTTCACCCATTTGGC 2672
|| ||| | | | || ||| |||| || | | || | ||| | |
Sbjct: 8241 TCATT-TGCTT-C-ATCACT----GGCCACCTCTGGTTGGGGGAAGT-CACACTGGAAAC 8292
Query: 2673 A-GTGGA-A-ATGATAGTGGGAACATGGAGCCA-TGGAGAT-TG-GGCCCAAGGGACTTG 2726
| | || | | | || |||| | |||| | ||| | | | || | | | ||||
Sbjct: 8293 AAGGGGGCAGAGGGAAGAGGGA-C-TGGAACTTGTGGGGGTCTAAGGGTCTTGAGGCTTG 8350
Query: 2727 AACCTTTGTGTCCTAATGTTTTGTGTTTATAGGTGATGTCAATC-CTT-CGCAG 2778
|| | ||| | |||| | ||| || || ||| | ||| | |||
Sbjct: 8351 T--CTGTAATACCTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTTGCCCAG 8402
Score = 831 (130.7 bits), Expect = 0., Sum P(12) = 0.
Identities = 485/768 (63%), Positives = 485/768 (63%), Strand = Plus / Plus
Query: 3109 AACTCAGAA-ATCCGCCTGCCTCTGCCTCCCGA-GTGCTGGGATTAAAGGTGGGCGCCAC 3166
| ||||| ||| ||||||||| ||||||| | |||||||||||| ||||| | |||||
Sbjct: 8902 ACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCAC 8961
Query: 3167 CATGCCTGGTTTGAG-G-ATGGTTTTAAA-ATT--CTA--ATC-T-TCAAAAAAAAAAAA 3217
|| | |||| | | | | || |||| ||| | | | | || | ||| |
Sbjct: 8962 CACGTCTGGCCTCATTGTAATGTCTTAATGATTTACAAGGAAAGTGTCTATGAAAGACT- 9020
Query: 3218 TAA-TAA-T-TCAAATCTTCCTGTCTCTACCTACTATGTGCCAGGTTAGCCTTTCTAACC 3274
|| | | |||| || |||| || ||| || | || ||| || || ||
Sbjct: 9021 TAGGTCCCTGTCAA-TCATCCTTTCAG-ACCC-CTTCATCTTAGTTTAT--TTCCTTCCC 9075
Query: 3275 CTTTTC-ATCTGGGGTTTTCTTTTTCTCTACAGAGCTGGGTCGACGAGA-A-GACTCCAT 3331
||| | ||||| | | || | |||| |||| | | | ||||||
Sbjct: 9076 CTTACAGAGCTGGG-TGGACGAGAAG---AC-GCCCTGGA-CGACTCGTTATGGCTCCAT 9129
Query: 3332 GGACAA-CTCGA-T-A--TGGCTC-CATTGC-AGGCCTAGCAGAGCTGGGACATGATGTT 3384
| || || | | | ||| | | || |||||| ||| | | ||| |
Sbjct: 9130 CG-CAGGCTTGGCTGAGCTGGGACACGATGTTAGGCCTCTGGGAGGAAGAA-ATGGGGGA 9187
Query: 3385 AGTCTC-CAGGAA-GAGCTGGGGGAGGGGCAGT-TACATTTGGTGTAGGAGGAGCCTCTG 3441
| | ||| | ||| | ||||| || | ||| | | |||| | || |||
Sbjct: 9188 GGGGACACAGTCATGAGGTTATAGAGGG-CACTGTACCCCCA-TCTGGGAG-A-CC-CTG 9242
Query: 3442 GTGACCTTTTAGCCTGGGATTCTCCCCTTCCTTCCCACCAGGTGATTAAGACGCTAATTC 3501
|||||| | || | | || ||| |||| | | | ||||| || ||||| || ||||
Sbjct: 9243 GTGACCCTCCGGCTTTTGCTTGTCCTTTTCCCTTCTAACAGGTTATCAAGACTCTGATTC 9302
Query: 3502 TGCCAAGGCTGCAGCAGGAAGGGGAACGGATCCGCAGTGTCTTGGATGGGCCTGTGCTGA 3561
|||| ||||||||||||||||||| |||||||||||||| |||| || ||||||||||
Sbjct: 9303 TGCCCCGGCTGCAGCAGGAAGGGGAGCGGATCCGCAGTGTGCTGGACGGCCCTGTGCTGA 9362
Query: 3562 GCAACATCGACCGTATTGGAGCAGACCATGTGCAGAGCCTTCTCCTGGTGA-TGAACCCC 3620
||||||| ||||| |||||||||||||||||||||||||| || ||||||| |||| |||
Sbjct: 9363 GCAACATTGACCGGATTGGAGCAGACCATGTGCAGAGCCTCCTGCTGGTGACTGAAGCCC 9422
Query: 3621 ACCGTACCCGCCCCTTCTTCCCACCAGCCCCACCCTCAGTTGCCA-CAAGCATGGCTACA 3679
| || ||| | ||| | || || | ||| |||| | ||||||| ||
Sbjct: 9423 -CTGTCCCCACACCTGC--CC-ACT-GAGACACAGGCAGTGTTTAGCAAGCATATGG-CA 9476
Query: 3680 GTGTTTTAGCAAGCACGAGGCACATCTTA-C-TCTTTTACTCAAGAGG-C-TAGCACTGT 3735
| ||||| | | | | |||||| | || | | ||| |||| | | ||| ||
Sbjct: 9477 -TATTTTATTCA-CTT-ACTCCCATCTTTGCCTCATGTTTTCA-GAGGACATTGCAGAGT 9532
Query: 3736 TGTG-TAC-ATGGAA-AGCAAGGCACAAGC-AGAA-AGCCTTGA-TAGTCAATAACTT-- 3787
|| ||| || | || | || | | ||| || || || || |||||
Sbjct: 9533 C-TGATACTATTTTACAG-ATGGAAAGACTGAGATTAGACT-GAGTAAGAAATAAGGGGG 9589
Query: 3788 CTGGACCACACTGCCTTCATCCTGTT-TGCCT-CACTCTATG-GCTTA 3832
|||| | | || |||| ||||| | || |||||| | || ||
Sbjct: 9590 CTGGGCATGA-TGGCTTCTGCCTGTAATCCCAGCACTCTGGGAGCCTA 9636
Score = 741 (117.2 bits), Expect = 0., Sum P(12) = 0.
Identities = 173/204 (84%), Positives = 173/204 (84%), Strand = Plus / Plus
Query: 4535 CTTCTCTACAGAAACACTGTGCCCCAGTACTGGCCAAGCTGCGCCCTCCACCTGACAATC 4594
|| ||| |||||||||||||| || || ||||| ||||||||||| || ||||||||||
Sbjct: 10806 CTGTTCTGCAGAAACACTGTGCTCCTGTTCTGGCAAAGCTGCGCCCACCGCCTGACAATC 10865
Query: 4595 AGGATGCCTACCGGGGAGAATTTGGGTCCCTTGGGCCCCTTCTCTGTTCCCATGTGGTGA 4654
|||| ||||| |||| |||||| ||||||||||||||||| ||||| ||||| ||||| |
Sbjct: 10866 AGGACGCCTATCGGGCAGAATTCGGGTCCCTTGGGCCCCTCCTCTGCTCCCAGGTGGTCA 10925
Query: 4655 AGGCCAGGGCCCAGGCTGCTCTACAAGCTCAGCAGGTCAACAGGACCACACTCACCATCA 4714
|||| |||||||||||||||| || ||||||||||||||||||||||| || |||||||
Sbjct: 10926 AGGCTCGGGCCCAGGCTGCTCTGCAGGCTCAGCAGGTCAACAGGACCACTCTGACCATCA 10985
Query: 4715 CACAGGTCAGCTGCTGAGGGAGGA 4738
| |||||| | || | | | |||
Sbjct: 10986 CGCAGGTCCGTGGCCGGGTGGGGA 11009
Score = 724 (114.7 bits), Expect = 0., Sum P(12) = 0.
Identities = 184/227 (81%), Positives = 184/227 (81%), Strand = Plus / Plus
Query: 1239 TCCTCCTACCTTC-TCATCACTCCTGCTGTGACCACTTTCCCACCAGCTCCCAAAGAGCA 1297
| || ||| || ||| | |||| |||||| | |||||||||||||||||||||||||
Sbjct: 6393 TTCTACTATGCTCATCACCCCTCCCGCTGTGCCTGCTTTCCCACCAGCTCCCAAAGAGCA 6452
Query: 1298 GCAGAAGGCTGAGGCCACAGAACCCCTGAAATCAGCAAAGCCAGGCCAAGAAGAAGATGG 1357
||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||| ||
Sbjct: 6453 ACAGAAGGCTGAAGCCACAGAACCCCTGAAGTCAGCCAAGCCAGGCCAGGAGGAAGACGG 6512
Query: 1358 ACCCCTGAAAGGCAAAGGTCAAGGGGCAGCTGCAGCTGATGGCAAAGGTCAGTG-TCCT- 1415
||||||||| ||||||||||||||||| | |||| || ||||||||||||| ||||
Sbjct: 6513 ACCCCTGAAGGGCAAAGGTCAAGGGGCCACCACAGCCGACGGCAAAGGTCAGTCCTCCTA 6572
Query: 1416 GGCCAGGCCCCTTCCTACTCTTATCCCAAAGCCAGGTGGTCCTCAGT 1462
||| ||||| || |||||| |||||||||| ||| | | ||
Sbjct: 6573 GGCTAGGCCTCTCTGGACTCTTG-CCCAAAGCCACATGGCCGTTTGT 6618
Score = 691 (109.7 bits), Expect = 0., Sum P(12) = 0.
Identities = 221/299 (73%), Positives = 221/299 (73%), Strand = Plus / Plus
Query: 1 GAATTCCAGCATGGCCGAGGAGAAGAAACTGAAACTCAGCAATACTGTGTTGCCCTCTGA 60
| | ||||| ||||| ||||||||||| ||||| || ||||| |||||| ||||||| ||
Sbjct: 5138 GGACTCCAGAATGGCTGAGGAGAAGAAGCTGAAGCTTAGCAACACTGTGCTGCCCTCGGA 5197
Query: 61 GTCCATGAAGGTGGTGGCAGAATCTATGGGCATTGCTCAGATTCAGGAGGAGACTTGCCA 120
|||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 5198 GTCCATGAAGGTGGTGGCTGAATCCATGGGCATCGCCCAGATTCAGGAGGAGACCTGCCA 5257
Query: 121 GCTACTGACAGATGAGGTCAGCTACCGCATCAAGGAGATTGCCCAGGTAACCCT----TT 176
||| || || ||||||||||||||||||||||| ||||| || ||||| |||| ||
Sbjct: 5258 GCTGCTAACGGATGAGGTCAGCTACCGCATCAAAGAGATCGCACAGGTGACCCGGCCCTT 5317
Query: 177 -TGTCCAGCTTCCCTTTGTG-CTAACACTCCAACCTCCTATGTAACTCCAGATATCCTTG 234
||||||||| | ||| | | | | || | || || || ||| | |||
Sbjct: 5318 CTGTCCAGCTCTACATTGGGTCCATGTCACCCAGGGCCCC-GTC-CTTAGGAT-T--TTG 5372
Query: 235 AACTTCTGACCCTCCTGCCTCCACCTCCCACTGCTGGGATTGAGGTTCTAATAC-CATG 292
|| || | | ||| | || | |||| | || |||| |||| || | ||||
Sbjct: 5373 GGCTGATGTCTGTTCTGTCACCGAC-CCCAG-GATGCC-TTGAAGTTC--ATGCACATG 5426
Score = 654 (104.2 bits), Expect = 0., Sum P(12) = 0.
Identities = 210/282 (74%), Positives = 210/282 (74%), Strand = Plus / Plus
Query: 2116 ATGAGGCTCCA-AGGGAGGGGGATGACAAGGTAGGTTCATCTGAGGG-CTCTCTGTGCC- 2172
|||||| |||| || | ||| | | || | | | || | |||||| ||| ||| ||
Sbjct: 7444 ATGAGGTTCCACAGTGCAGGG-ACGGCAGTGGAAGCTCCTGTGAGGGTCTCCCTGCCCCA 7502
Query: 2173 TACC-ATCAACTTC-CCCTCTCCTAGGTCCGTGTGAATGTAGTTCAGAATAACCTGGCCT 2230
| || | || |||| ||||| | ||||||||||||| || |||||||| |||||||||
Sbjct: 7503 TGCCCAGCA-CTTCTCCCTCCCACAGGTCCGTGTGAACGTGGTTCAGAACAACCTGGCCC 7561
Query: 2231 TGCTTATCTACCTGATGCGTATGGTGAAGGCCCTGATGGACAACCCCACACTGTATCTAG 2290
| || ||||||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct: 7562 TACTCATCTACCTGATGCGTATGGTGAAAGCGCTGATGGACAACCCCACGCTCTATCTAG 7621
Query: 2291 AGAAATATGTGAGTGGTCTCGCCTACCTGCTGTCTTTTGCAGGGTC-AGGGGCCCTTCTG 2349
| ||||| ||||||| || ||| | | || ||| ||||| | |||| |||| |||
Sbjct: 7622 AAAAATACGTGAGTGATCCTGCCCATC--CTCCCTTC--CAGGGACTAGGGACCCTGCTG 7677
Query: 2350 GCAACCTCACCACAGGAGGTCTGGTATCAG-ACTCACTGACA 2390
|| | || |||||| ||| | |||| | | || |||
Sbjct: 7678 CCA--C-CA--ACAGGAAGTCAGTGGTCAGCAGTGGCTCACA 7714
Score = 460 (75.1 bits), Expect = 0., Sum P(13) = 0.
Identities = 110/128 (85%), Positives = 110/128 (85%), Strand = Plus / Plus
Query: 550 ATCTCT-TTCCCCC-CCACCCCCTAGGATGCCCTGAAGTTCATGCACATGGGGAAACGAC 607
|| ||| ||| | || |||| |||||||| |||||||||||||||||||||| || |
Sbjct: 5378 ATGTCTGTTCTGTCACCGACCCC-AGGATGCCTTGAAGTTCATGCACATGGGGAAGCGGC 5436
Query: 608 AGAAGCTCACTACCAGTGACATTGACTATGCATTGAAGTTAAAGAATGTGGAGGTGATTT 667
|||||||||| ||||||||||||||||| || |||||| |||||||||| ||||||||||
Sbjct: 5437 AGAAGCTCACCACCAGTGACATTGACTACGCCTTGAAGCTAAAGAATGTCGAGGTGATTT 5496
Query: 668 GGGGGGAC 675
|||| |||
Sbjct: 5497 GGGGAGAC 5504
Score = 357 (59.6 bits), Expect = 1.8e-275, Sum P(12) = 1.8e-275
Identities = 201/333 (60%), Positives = 201/333 (60%), Strand = Plus / Plus
Query: 5558 CTCCTTCTCATCCTTCTCCAGTCC-CCCCTTCATCT-TCTTCACCA-TCCCCACTTGGGG 5614
|||| || ||| | || || |||| || | || | || | ||| ||| ||
Sbjct: 11954 CTCCAGTTCCTCCCCCGGCA-TCGTCCCCGTCCCCACTCAGCGGCAGTGCCCT-TTGTGG 12011
Query: 5615 GAAGTACCCTCTGTGGGGGGA-AGCAGGAAGCTGGGGACAGCCCC-CCTCCAGCTCCAGG 5672
| | | | | ||||| || | | ||| | || ||| | | |
Sbjct: 12012 GGGGAAGCAGGAGGCTGGGGACAGTCCCCCTCCAGCTCCAGGGACTCCAAAAGC-CAATG 12070
Query: 5673 GACTCCAAAGGCTAA-T--GGCTCGCAGCCTACTGGACCTGGCT-CTCC-CCAGCCTGCT 5727
| |||| | | | || | ||||| | | ||| || | | |||| || ||| ||
Sbjct: 12071 G-CTCCCA-GCCCAACTCCGGCTCCCCTCAGCCTGCTCCGTGATGCTCCACCTGCCAGCC 12128
Query: 5728 CTGTGATGTGTCACATGTGCTGACCTCCTCTCTTGTGCAGATTCCTACACACTCAAACAA 5787
| ||| | |||| ||| ||| | | | ||||| | | ||||| || |
Sbjct: 12129 CCCGGAT-TCCCACACATGCAGACATGTACACACGTGCACGTAC--ACACATGCATGCTC 12185
Query: 5788 CCTGTGAGGGAGGAAGGAGGAAAGGTTTTCCC-CA-GTGACTTTCTTTTTAGATATTGTA 5845
|| | || |||||| | | | |||| || || |||||||||||||||||||||
Sbjct: 12186 GCTAAGCGGAAGGAAGTTGTAGATTGCTTCCTTCATGTCACTTTCTTTTTAGATATTGTA 12245
Query: 5846 CAGTAAGTTCCTCAGAATAAAAGTTGGATTTGT 5878
||| |||| ||||||||||||||| | |||||
Sbjct: 12246 CAGCCAGTTTCTCAGAATAAAAGTTTGGTTTGT 12278
Score = 253 (44.0 bits), Expect = 7.5e-228, Sum P(9) = 7.5e-228
Identities = 77/98 (78%), Positives = 77/98 (78%), Strand = Plus / Plus
Query: 3086 CTTTGTAGACCAGGCTGGTCTCAAACTCAGA---A----ATCCGCCTGCCTCTGCCTCCC 3138
|| ||| | |||||||||| |||||||||| | ||||||| |||| |||||||
Sbjct: 6827 CTATGTTGGCCAGGCTGGTTTCAAACTCAGCCTCATGTGATCCGCCCGCCTTGGCCTCCC 6886
Query: 3139 GA-GTGCTGGGATTAAAGGTGGGCGCCACCATGCCTGG 3175
| |||||||||||| ||||| | ||||||||||| ||
Sbjct: 6887 AAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCAGG 6924
Score = 252 (43.9 bits), Expect = 4.6e-110, Sum P(5) = 4.6e-110
Identities = 90/123 (73%), Positives = 90/123 (73%), Strand = Plus / Plus
Query: 3079 GGACTCACTTTGT-AGACCAGGCTGGTCTCAAACTCA-GA---A---ATCCGCCTGCCTC 3130
|| |||| |||| || ||||| ||||||||| ||| || | ||||||| |||||
Sbjct: 1490 GGTTTCACCTTGTTAG-CCAGGATGGTCTCAATCTCCTGACCTAGTGATCCGCCCGCCTC 1548
Query: 3131 TGCCTCCCGA-GTGCTGGGATTAAAGGTGGGCGCCACCATGCCTGGTTTGAGGATGGTTT 3189
||||||| | |||||||||||| ||| | | ||||||| | | || || || |||
Sbjct: 1549 GGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGGCCGGCCC-AGTTTGCTTT 1607
Query: 3190 TAA 3192
|||
Sbjct: 1608 TAA 1610
Score = 212 (37.9 bits), Expect = 1.3e-294, Sum P(11) = 1.3e-294
Identities = 86/124 (69%), Positives = 86/124 (69%), Strand = Plus / Plus
Query: 3058 GTGTGTAGCCCTGGCTGTC-CTGGACTCACTTTGTAGACCAGGCTGG-TCTCAAACTCA- 3114
| ||| || || | || | || |||||| | | ||| ||| ||||| |||
Sbjct: 10064 GAGTGCAGTGGTG-CGATCTCAGG-CTCACT--GCA-ACCT--CTGCCTCTCAGGTTCAA 10116
Query: 3115 GAAATCCGCCTGCCTCTGCCTCCCGAGT-GCTGGGATTAAAGGTGGGCGCCACCATGCCT 3173
| ||| | | |||||| ||||||| ||| ||||||| | ||| ||||||||||||||
Sbjct: 10117 GCAATTCTCATGCCTCAGCCTCCCAAGTAGCTGGGACCACAGGCACGCGCCACCATGCCT 10176
Query: 3174 GGTT 3177
|| |
Sbjct: 10177 GGCT 10180
Score = 205 (36.8 bits), Expect = 5.7e-108, Sum P(5) = 5.7e-108
Identities = 87/131 (66%), Positives = 87/131 (66%), Strand = Plus / Plus
Query: 3083 TCACTTTGTAGACCAGGCTGGTCTCAAACTCA-GAA------ATCCGCCTGCCTCTGCCT 3135
|||| ||| | ||||| ||||||| | ||| || ||||| | ||||| ||||
Sbjct: 3564 TCACCATGTTGGCCAGGATGGTCTCCATCTCTTGACCTGGTGATCCGTCCGCCTCGGCCT 3623
Query: 3136 CCCGA-GTGCTGGGATTAAAGGTGGGCGCCACCATGCCTGGTTTGAGG-ATGGTTTTAAA 3193
||| | |||||||||||| ||||| | |||| | ||| | || || |||||
Sbjct: 3624 CCCAAAGTGCTGGGATTACAGGTGTGAGCCAACGCGCCCGACCGGATTTATTTTTTTACC 3683
Query: 3194 ATTCTAATCTT 3204
|| | | ||
Sbjct: 3684 TTTTTTTTTTT 3694
Score = 204 (36.7 bits), Expect = 1.1e-138, Sum P(7) = 1.1e-138
Identities = 82/120 (68%), Positives = 82/120 (68%), Strand = Plus / Plus
Query: 3056 CTGTGTGTAGCCCTGGCTGTC-CTGGACTCACTTTGTAGACCAGGCTGGTCTCAAACTCA 3114
||| | || || |||| || ||||||| | | || ||| | | ||||
Sbjct: 3724 CTG-GAGT-GCAATGGCGCAATCTCAACTCACT--GCAAACTCTACTGC-CG-AGGCTCA 3777
Query: 3115 -GAAATCCGCCTGCCTCTGCCTCCCGAGT-GCTGGGATTAAAGGTGGGCGCCACCATGCC 3172
| || | |||||||| ||||||| ||| |||||||||| ||| |||||||||||||
Sbjct: 3778 AGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACGCGCCACCATGCC 3837
Score = 200 (36.1 bits), Expect = 1.5e-138, Sum P(6) = 1.5e-138
Identities = 82/118 (69%), Positives = 82/118 (69%), Strand = Plus / Plus
Query: 3061 TGTAGCCC--TGGCT-G-TCCTGGACTCACTTTGTAGACCAGGCTGGTCTCAAACTCA-G 3115
|| || || |||| | || ||| |||||| | | ||| | || || ||| |
Sbjct: 3416 TGGAGTCCAGTGGCACGATCTTGG-CTCACT--GCA-ACCTC-CACTTCCCAGGTTCAAG 3470
Query: 3116 AAATCCGCCTGCCTCTGCCTCCCGAGT-GCTGGGATTAAAGGTGGGCGCCACCATGCC 3172
|| | | |||||| ||||||||||| ||||||| || ||||| | ||||||| |||
Sbjct: 3471 TGATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCGTGCCACCACGCC 3528
Score = 195 (35.3 bits), Expect = 2.4e-138, Sum P(6) = 2.4e-138
Identities = 49/60 (81%), Positives = 49/60 (81%), Strand = Plus / Plus
Query: 3114 AGAAATCCGCCTGCCTCTGCCTCCCGAGT-GCTGGGATTAAAGGTGGGCGCCACCATGCC 3172
|| || | ||||||| ||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 2801 AGTGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGTGATTACAGGTGCCCGCCACCATGCC 2860
Score = 179 (32.9 bits), Expect = 3.7e-293, Sum P(11) = 3.7e-293
Identities = 103/172 (59%), Positives = 103/172 (59%), Strand = Plus / Plus
Query: 3028 TTTTTTTGGTTTTTGAAACAGGATTTTTCTGTGTGTAGCCCTGGC-TGTCCTGGACTCA- 3085
||||||| ||| ||| |||| | ||||| | || || ||| | ||
Sbjct: 10323 TTTTTTTTTTTTCTGAGACAGTCTCACTCTGTCACCCAAGCGGGAGTGCACTG-ATGCAA 10381
Query: 3086 -CTTTGTAGAC--CAGGCTGGTCT--CAAACT-CAGAAATCCGCCTGCCTCTGCCTCCCG 3139
|| || || ||| || | | | || || | | |||| ||||||
Sbjct: 10382 CCTCTGCTCACTGCAGCCTCCACCACCTGGGTTCAAGCATTCTAGTACCTCAACCTCCCC 10441
Query: 3140 AGT-GCTGGGATTAAAGGTGGGCGCCACCATGCCTGGTTTGAGGATGGTTTT 3190
||| ||||||| || ||||| | |||||||||||||| | | || |||
Sbjct: 10442 AGTAGCTGGGACTACAGGTGCGTGCCACCATGCCTGGCTAGTTTTTGTATTT 10493
Score = 178 (32.8 bits), Expect = 0., Sum P(12) = 0.
Identities = 54/74 (72%), Positives = 54/74 (72%), Strand = Plus / Plus
Query: 3104 TCTCAAACTCAGAA-ATCCGCCTGCCTCTGCCTCCCGA-GTGCTGGGATTAAAGGTGGGC 3161
|| | | ||||| ||| |||||||| ||||||| | |||||||||||| ||| |
Sbjct: 8752 TCCCGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACGGGTATGA 8811
Query: 3162 GCCACCATGCCTGG 3175
||||| |||||
Sbjct: 8812 GCCACTGCACCTGG 8825
Score = 177 (32.6 bits), Expect = 1.5e-137, Sum P(6) = 1.5e-137
Identities = 47/60 (78%), Positives = 47/60 (78%), Strand = Plus / Plus
Query: 3114 AGAAATCCGCCTGCCTCTGCCTCCCGAGTG-CTGGGATTAAAGGTGGGCGCCACCATGCC 3172
|| ||| | |||||||| ||||||||||| |||||| || ||||| | ||||| |||
Sbjct: 2194 AGCAATTCTCCTGCCTCAGCCTCCCGAGTATCTGGGACTACAGGTGCACATCACCACGCC 2253
Score = 177 (32.6 bits), Expect = 1.5e-137, Sum P(6) = 1.5e-137
Identities = 55/72 (76%), Positives = 55/72 (76%), Strand = Plus / Plus
Query: 3111 CTCA-GAAATCCGCCTGCCTCTGC--C-TCCCGAGT-GCTGGGATTAAAGGTGGGCGCCA 3165
|||| | || | |||||||| || | |||||||| || |||| || ||||| ||||
Sbjct: 1390 CTCACGCCATTCTCCTGCCTCAGCAGCCTCCCGAGTAGCAGGGACTATAGGTGCCTGCCA 1449
Query: 3166 CCATGCCTGGTT 3177
|||||||||| |
Sbjct: 1450 CCATGCCTGGCT 1461
Score = 172 (31.9 bits), Expect = 2.1e-202, Sum P(8) = 2.1e-202
Identities = 108/179 (60%), Positives = 108/179 (60%), Strand = Plus / Plus
Query: 2757 AGGTGATGTCAATCCTTCGCAGTTAGTCTTTCTTTTTTTTTTTTTCCTTT-TTCCAGTTT 2815
|||| | || || | | | | | | ||| | ||| |||| ||||| ||
Sbjct: 6007 AGGTAACCTCCATGCCCCACCCTCTGGGTCTCTGGGTCCCTTTCCCCTTCCTTCCACCTT 6066
Query: 2816 TGTTTTTTTGAGACAGAGTTTCTCTGTGTAGCCCTAACTGCCCTGGAACTTGCTCTGTAG 2875
| ||||||||||||||||| || || ||| ||| ||| || | | ||| ||
Sbjct: 6067 T-TTTTTTTGAGACAGAGTCTCACTCTGTTGCCTGTGCTGGAGTGCAGGA-GTGCTGGAG 6124
Query: 2876 C-CAG-G-CTTGGCCTTGAACTCAGAG--ATCCAC--CCTCCTGTGAGTTCTGG-GATT 2926
||| | || |||| |||| | | || ||||||| | |||| | ||||
Sbjct: 6125 TGCAGTGGCTCAATCTTGG-CTCACTGCAAACCTGTGCCTCCTG-G-GTTCACGCGATT 6180
Score = 170 (31.6 bits), Expect = 1.3e-294, Sum P(11) = 1.3e-294
Identities = 62/88 (70%), Positives = 62/88 (70%), Strand = Plus / Plus
Query: 2769 TCCTTCGCAG-TTAGTCTTTCTTTTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAG 2827
|| ||| || ||||| | | |||| |||||| |||| | |||| ||||||||||
Sbjct: 9981 TCATTCACACATTAGTGCC-CATGTTTTCTTTTTC-TTTT--CTTTTTT-TTTTTTTGAG 10035
Query: 2828 ACAGAGTTTCTCTGTGTAGCCCTAACTG 2855
| |||| || || |||| ||| |||
Sbjct: 10036 ATGGAGTCTCACTCTGTAACCCAGGCTG 10063
Score = 169 (31.4 bits), Expect = 3.1e-291, Sum P(11) = 3.1e-291
Identities = 55/77 (71%), Positives = 55/77 (71%), Strand = Plus / Plus
Query: 3118 ATCCGCCTGCCTCTGCCTCCCGAGT-GCTGGGATTAAAGGTGGGCGCCACCATGCCTGGT 3176
|| | |||||||| ||||||||||| |||||||||| ||| | ||| ||| || |
Sbjct: 8633 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCCGCCACACCCAGC 8692
Query: 3177 TTGAGGATG-GTTTTAA 3192
| | || ||||| |
Sbjct: 8693 TA-ATTTTGTGTTTTTA 8708
Score = 165 (30.8 bits), Expect = 1.6e-292, Sum P(11) = 1.6e-292
Identities = 49/66 (74%), Positives = 49/66 (74%), Strand = Plus / Plus
Query: 3109 AACTCAGAA-ATCCGCCTGCCTCTGCCTCCCGA-GTGCTGGGATTAAAGGTGGGCGCCAC 3166
| ||||| ||| ||| ||||| ||||||| | |||||||||||| ||| | ||||
Sbjct: 10246 ACCTCAGGTGATCTGCCAGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCAC 10305
Query: 3167 CATGCC 3172
|| ||
Sbjct: 10306 CACACC 10311
Score = 164 (30.7 bits), Expect = 1.5e-291, Sum P(11) = 1.5e-291
Identities = 188/322 (58%), Positives = 188/322 (58%), Strand = Plus / Plus
Query: 2710 TGGGCCCAAGGGACTTGA-A-CCTTTGTGTCCTAATGTTTTGTGTTTATAGGTGATGTCA 2767
|| | || | || || | ||| | ||| || || || | ||| ||| ||| |
Sbjct: 10244 TGACCTCAGGTGATCTGCCAGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGC-ATG--A 10300
Query: 2768 ATCCTTCGCAGTTAGTCTTTCTTTTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAG 2827
| || | || || | |||||||||||||||| || | ||| | | | |
Sbjct: 10301 A-CCACCACACCCAGCCATTCTTTTTTTTTTTTTTCTGAGAC-AGTCTCACTCTGTCACC 10358
Query: 2828 --A-CAG-AGTTTCTCTG-TGTAGCC-CTAACTGCCCTGGAACTTGCTCTGTAGCCAGGC 2881
| | | ||| | ||| || | || || || | ||| | | | | | | || ||
Sbjct: 10359 CAAGCGGGAGTG-CACTGATGCAACCTCTG-CT-CACTGCAGCCTCCACC--A-CCTGGG 10412
Query: 2882 TTGGCCTTGAACTC-AG-AGATCCACC-CTCCTGTGAGTTCTGGGATTAAAAGGCATGTG 2938
|| | | | || || | || ||| | || || || |||||| || | || |||
Sbjct: 10413 TT---CAAGCATTCTAGTACCTCAACCTCCCCAGT-AG--CTGGGACTACA-GGTGCGTG 10465
Query: 2939 CCACCACTTTGTGGC-AGCCATCGCTTTTTTGAAACAGTATACCATGTACTCCA----GG 2993
|||||| | |||| || | | ||||| || || | | ||||| ||
Sbjct: 10466 CCACCA-TGCCTGGCTAGTTTTTGTATTTTTAGTGGAG-ATGAGGTTT-CTCCATTTTGG 10522
Query: 2994 C-AGGC-CTTAAACTTACAGTG 3013
| |||| ||| | || | ||||
Sbjct: 10523 CCAGGCTCTTGACCTCA-AGTG 10543
Score = 164 (30.7 bits), Expect = 2.2e-105, Sum P(5) = 2.2e-105
Identities = 56/82 (68%), Positives = 56/82 (68%), Strand = Plus / Plus
Query: 3111 CTCAGA-AATCCGCCTGCCTCTGCCTCCCGA-GTGCTGGGATTAAAGGTGGGCGCCACCA 3168
|||| | ||||| || ||||||||| || | |||||||||||| || | | | |||
Sbjct: 913 CTCAAACAATCCCCCCACCTCTGCCTTCCAAAGTGCTGGGATTACTGGGGTGAGTTACCT 972
Query: 3169 TGCCTGGTTTGAGGATGGTTTT 3190
| ||| | | || ||||
Sbjct: 973 CTCTTGGCTCCAATTTGCTTTT 994
Score = 156 (29.5 bits), Expect = 6.4e-141, Sum P(6) = 6.4e-141
Identities = 170/297 (57%), Positives = 170/297 (57%), Strand = Plus / Plus
Query: 2728 ACCTTTGTGTCCTAATGTTTTGTGTTTA-TAGG-TGATGTCAA-TC-CTTCGCAGTTAGT 2783
|||| || | | || || || | ||| | || ||| || | || ||| || | |
Sbjct: 929 ACCTCTGCCTTCCAAAGTGCTGGGATTACTGGGGTGA-GTTACCTCTCTTGGCTCCAA-T 986
Query: 2784 CTTTCTTTTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGT- 2842
|| |||||||||||||| | ||| | | | | | ||| | | ||
Sbjct: 987 -TTGCTTTTTTTTTTTTTTTGAGATGGAGTCTCTCTCTATCGCC-CAG-GCTGGAGTGCA 1043
Query: 2843 GTAGCCCTAACT-GC--C-CTGGAACTTGCTCTGTAGCCAGGCTTGGCCTTGAACTCAGA 2898
|| || | | || | | ||| ||| | | || | || || | | | ||| |
Sbjct: 1044 GTGGCACGATCTCGGTTCACTGCAACCTCCGCT-T--CCTGGTTCAAGCG-GTTCTCCCA 1099
Query: 2899 GATCCACCCTCCTGTGAGTTCTGGGATTAAAAGGCATGTGCCACCACTTTGTGGC-AGCC 2957
|| | ||||| || |||||| || | ||| ||||||| | | ||| |
Sbjct: 1100 CCTC-AGCCTCCCA-GATAGCTGGGACTACA-GGCGCCCGCCACCA-TGTCTGGTTAATT 1155
Query: 2958 ATCGCTTTTTTG-AAA----CAG--TAT-ACCATGTACTCCAGGCAGGCCTTAAACT 3006
| | ||||| ||| ||| | | ||||||| ||||| || || ||||
Sbjct: 1156 TTTGTGTTTTTACAAAAAGACAGGGTTTCACCATGTTGGCCAGGGTGGTCTCGAACT 1212
Score = 151 (28.7 bits), Expect = 7.5e-228, Sum P(9) = 7.5e-228
Identities = 51/68 (75%), Positives = 51/68 (75%), Strand = Plus / Plus
Query: 2788 CTTTTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGTGTAGC 2847
| ||| |||| |||||||||| |||||||||| |||||||||| || || ||| |
Sbjct: 6612 CGTTTGTTTTGTTTCCTTTTT----TTTTGTTTTT--GAGACAGAGTCTCACTCTGTCAC 6665
Query: 2848 CCTAACTG 2855
|| |||
Sbjct: 6666 CCAGGCTG 6673
Score = 150 (28.6 bits), Expect = 8.0e-198, Sum P(8) = 8.0e-198
Identities = 40/51 (78%), Positives = 40/51 (78%), Strand = Plus / Plus
Query: 3118 ATCCGCCTGCCTCTGCCTCCCGA-GTGCTGGGATTAAAGGTGGGCGCCACC 3167
|||| || |||| ||||||| | |||||||||||| ||| | ||||||
Sbjct: 6314 ATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC 6364
Score = 150 (28.6 bits), Expect = 0., Sum P(13) = 0.
Identities = 72/111 (64%), Positives = 72/111 (64%), Strand = Plus / Plus
Query: 357 CCCGTATTTC-TCAGGGT-CAGAGATGAGTATCTCTTCTTAGTGGGGCATTGGTGGGGTA 414
|| | | | | |||| | || | || | | |||| | | ||||| | ||| |
Sbjct: 1748 CCTGGAATACATCAGTGAACATA-ATAAAGAGCTCTG-TCGGCCGGGCACAG-TGGCTCA 1804
Query: 415 TGCCTTTAATCCCAGCACTT-GGTAGTCAGAGGCAGGG-GGAATCTCTTGA 463
|||| |||||||||||||| || || | ||| ||| |||| | | |||
Sbjct: 1805 CGCCTGTAATCCCAGCACTTTGGGAGGCC-AGGGTGGGTGGAA-CACCTGA 1853
Score = 149 (28.4 bits), Expect = 8.1e-292, Sum P(11) = 8.1e-292
Identities = 55/76 (72%), Positives = 55/76 (72%), Strand = Plus / Plus
Query: 3082 CTCACTTTGTAGACCAGGCTGGTCTCAAACTCA-GAAATCCGCCTGCCTCTGCCTCCCGA 3140
||| ||| | | ||||||| | | | |||| | |||| || |||| ||||||| |
Sbjct: 10512 CTCCATTT-TGG-CCAGGCTC-T-TGAC-CTCAAGTGATCCACCCACCTCAGCCTCCCAA 10566
Query: 3141 GTGCTGGGATTAAAGG 3156
|||||||||| | |||
Sbjct: 10567 GTGCTGGGAT-ACAGG 10581
Score = 149 (28.4 bits), Expect = 2.9e-141, Sum P(7) = 2.9e-141
Identities = 67/100 (67%), Positives = 67/100 (67%), Strand = Plus / Plus
Query: 2710 TGGGCCCAAGGGA-CTTGA-ACCTTTGTGTCCTAATGTTTTGTGTTTATAGG--TGATGT 2765
||||| |||| || | | ||||| | ||| | || ||| ||| ||| ||| |
Sbjct: 4552 TGGGCTCAAGCGATCCTCCTACCTTGGGCTCCCAGAGTGTTGGAATTACAGGCATGA-GC 4610
Query: 2766 CAATCCTTCGCAGTT-AGTCTTTCTTTTTTTTTTTTTCCT 2804
|| | | |||| || ||| ||||||||||||||||
Sbjct: 4611 CACTAGGCC-CAGTCCAGA-TTT-TTTTTTTTTTTTTCCT 4647
Score = 142 (27.4 bits), Expect = 2.7e-140, Sum P(6) = 2.7e-140
Identities = 48/65 (73%), Positives = 48/65 (73%), Strand = Plus / Plus
Query: 2791 TTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGTGTAGCCCT 2850
||| |||||| ||||| |||| ||||||||||||||||| | || ||| ||||
Sbjct: 1283 TTTGCTTTTTTTGTTTTT----TTTT-TTTTTTTGAGACAGAGTCTGGCTCTGTTGCCCA 1337
Query: 2851 AACTG 2855
|||
Sbjct: 1338 GGCTG 1342
Score = 140 (27.1 bits), Expect = 7.4e-141, Sum P(7) = 7.4e-141
Identities = 36/46 (78%), Positives = 36/46 (78%), Strand = Plus / Plus
Query: 2797 TTTTTCCTTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGT 2842
||| | |||| || |||| ||||||||||||||||| |||||
Sbjct: 3670 TTTATTTTTTTACCTTTTTTTTTTTTTTGAGACAGAGTCCATCTGT 3715
Score = 139 (26.9 bits), Expect = 3.7e-140, Sum P(6) = 3.7e-140
Identities = 107/191 (56%), Positives = 107/191 (56%), Strand = Plus / Plus
Query: 2727 AACCTTTGTGTCCTAATGTTTTGTGTTTATAGGTGATGTCAATCCTTCGCA-GTTAGTCT 2785
| ||| ||| ||| | | | | || | | |||| |||| | | | || ||
Sbjct: 605 ACCCTACCTGTACTACTCCTAAGCAGT-ATTGAT-ATGTTAATCTTCCTAATGTCCAACT 662
Query: 2786 TTCTTTTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGTGTA 2845
| | ||| ||||| ||| |||||||||||||| ||||| | |||
Sbjct: 663 GCAAGTGTGCCACTTTAATTTTTTTTTGTTT-TTTTTTTGAGACAGGGTTTCCGTCTGTT 721
Query: 2846 GCCCTAACTGCCCTGGAACTTGCTC--TGTAGCCAGGCTTG-GCCTTGAACTCAG-AGAT 2901
||| ||| || | | || | | | | | || |||| ||||| || |
Sbjct: 722 ACCCAGGCTGTTGTGCAG-TGGCACCATCTTGGCTCACTGCAGCCTCCAACTCCTCAGTT 780
Query: 2902 CCACCC-TCCT 2911
| | | ||||
Sbjct: 781 CAAGCGATCCT 791
Score = 137 (26.6 bits), Expect = 0., Sum P(12) = 0.
Identities = 43/61 (70%), Positives = 43/61 (70%), Strand = Plus / Plus
Query: 2804 TTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGTG-TAGCCCTAACTGCCCTGGA 2862
||||| |||||||||||||||| ||||||| || | | |||| ||| || |
Sbjct: 8525 TTTTTTTGTTTTTGTTTTTTTGAGATGGAGTTTCGCTCTTCTTGCCCAGGCTGGAGTGCA 8584
Query: 2863 A 2863
|
Sbjct: 8585 A 8585
Score = 132 (25.9 bits), Expect = 2.3e-133, Sum P(7) = 2.3e-133
Identities = 42/57 (73%), Positives = 42/57 (73%), Strand = Plus / Plus
Query: 399 GGGCATTGGTGGGGTATGCCTTTAATCCCAGCACT-TGGTAGTC-AGAGGCAGGGGG 453
|||||| | ||| | ||||| ||||||||||||| ||| || | || | | | ||
Sbjct: 9592 GGGCAT-GATGGCTTCTGCCTGTAATCCCAGCACTCTGGGAGCCTAGGAGTATGAGG 9647
Score = 128 (25.3 bits), Expect = 0., Sum P(11) = 0.
Identities = 90/148 (60%), Positives = 90/148 (60%), Strand = Plus / Plus
Query: 2811 AGTTTTGT-TTTTT--T-GAGACAGAGTTTCTCTGTGTAGCCCTAAC-TGCCCTGGAACT 2865
| |||||| ||||| | ||||||||||||| | ||| | | || || ||||||||
Sbjct: 8839 ATTTTTGTATTTTTAGTAGAGACAGAGTTTCACCATGTTGAC-TAGGGTGGTCTGGAACT 8897
Query: 2866 TGCTCTGTAGC-CAGGCT-TG-GCCTTGAACTCAGAGATCCACCCTCCTGTGAGTTCTGG 2922
| ||| | | |||| | |||| | ||| | ||| | ||| || | | ||
Sbjct: 8898 --C-CTG-ACCTCAGGTGATCTGCCT-GC-CTCGGCCTCCCAAAGTGCTGGGATTACAGG 8951
Query: 2923 GATTAAAAGGCATGTGCCACCACTTTGT 2950
| | || || || | ||||
Sbjct: 8952 TGTGAGCCACCACGTCTGGCCTCATTGT 8979
Score = 127 (25.1 bits), Expect = 1.3e-139, Sum P(6) = 1.3e-139
Identities = 139/242 (57%), Positives = 139/242 (57%), Strand = Plus / Plus
Query: 2783 TCTTTCTTTTTTTTTTTTTCCTTTTTCC-AGTTTTGTTTTTTTGAGACAGAGTTTC-T-C 2839
| ||| ||||||||||||| | | ||| | | | | ||| ||| | | |
Sbjct: 1290 TTTTTGTTTTTTTTTTTTTTTTGAGACAGAGTCTGGCTCTGTTGCC-CAGGCTGGAGTGC 1348
Query: 2840 TGTGTAGCCCTAACTGC-C-CTGGAACTTGCTCTGTAGCCAGGCTTG-GCC-TTGAACTC 2895
||| || | | || | ||| || | | | | || |||| ||| || ||
Sbjct: 1349 AGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCC-TC-CCGGGCTCACGCCATTCTCCTG 1406
Query: 2896 AGAGATCCACCCTCCTGTG-AGTTCTGGGATTAAAAGGCATGTGCCACCACTTTGTGGC- 2953
| | | ||||| | | || | |||| || | || |||||||| | ||||
Sbjct: 1407 CCTCAGC-AGCCTCCCGAGTAG--CAGGGACTATA-GGTGCCTGCCACCA-TGCCTGGCT 1461
Query: 2954 -AGCCAT-CGCTTTTTT-G-A-A-AC-AG-TAT-ACCATGTACTCCAGGCAGGCCTTAAA 3004
| | | |||||| | | | || || | | ||| ||| ||||| || || ||
Sbjct: 1462 AATTTTTTCTATTTTTTAGTAGAGACGAGGTTTCACCTTGTTAGCCAGGATGGTCTCAAT 1521
Query: 3005 CT 3006
||
Sbjct: 1522 CT 1523
Parameters:
ctxfactor=2.00
E=10
Query ----- As Used ----- ----- Computed ----
Strand MatID Matrix name Lambda K H Lambda K H
+1 0 +5,-4 0.192 0.173 0.357 same same same
Q=10,R=10 0.104 0.0151 0.0600 n/a n/a n/a
-1 0 +5,-4 0.192 0.173 0.357 same same same
Q=10,R=10 0.104 0.0151 0.0600 n/a n/a n/a
Query
Strand MatID Length Eff.Length E S W T X E2 S2
+1 0 5878 5878 10. 331 11 n/a 73 0.024 82
110 0.023 124
-1 0 5878 5878 10. 331 11 n/a 73 0.024 82
110 0.023 124
Statistics:
Database: NM_005641
Title: NM_005641
Posted: 6:31:35 PM CET Dec 19, 2002
Created: 6:31:17 PM CET Dec 19, 2002
Format: XDF-1
# of letters in database: 52,737,903,427,583
# of sequences in database: 1
# of database sequences satisfying E: 1
No. of states in DFA: 256 (256 KB)
Total size of DFA: 507 KB (2171 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 1
Search cpu time: 0.05u 0.00s 0.05t Elapsed: 00:00:00
Total cpu time: 0.07u 0.01s 0.08t Elapsed: 00:00:00
Start: Thu Dec 19 18:31:23 2002 End: Thu Dec 19 18:31:23 2002
|
