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Description: Replace tabs in gff files with spaces
GFFparsers are supposed to ignore all the text in lines that start with # but
for some reason, gffread doesn't like tabs in comments.
The number of tabs after which gffread complains seems to be related to the
following line, but since this is just a comment anyway, replacing tabs with
spaces seems like an easier fix.
Author: Pranav Ballaney
Bug-Debian: #962553
Last-Update: 2020-06-14
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- a/examples/mhcregion/hs-mm.gff
+++ b/examples/mhcregion/hs-mm.gff
@@ -3,7 +3,7 @@
##date Jun/03/2003 15:19:51
##
##/home/ug/jabril/development/softjabril/gfftools/gff2aplot/bin/ali2gff -x X87344 -y AF100956+AF027865 hs-mm.sim
-#name1:name2 source feature beg1:beg2 end1:end2 score strand frame group comment
+#name1:name2 source feature beg1:beg2 end1:end2 score strand frame group comment
X87344:AF100956+AF027865 sim96_LIN seqbounds 1:1 32000:35000 . . .
X87344:AF100956+AF027865 sim96_LIN alignment 863:804 19762:20115 18340.000 +:+ .:.
X87344:AF100956+AF027865 sim96_LIN fragment 863:804 890:831 0.790 +:+ .:. ## cumulative nmp: 0.001
--- a/examples/mhcregion/hs-mm.sim.gff
+++ b/examples/mhcregion/hs-mm.sim.gff
@@ -3,7 +3,7 @@
##date Jun/03/2003 16:41:22
##
## ali2gff -x X87344 -y AF100956+AF027865 hs-mm.sim
-#name1:name2 source feature beg1:beg2 end1:end2 score strand frame group comment
+#name1:name2 source feature beg1:beg2 end1:end2 score strand frame group comment
X87344:AF100956+AF027865 sim96_LIN seqbounds 1:1 32000:35000 . . .
X87344:AF100956+AF027865 sim96_LIN alignment 863:804 19762:20115 18340.000 +:+ .:.
X87344:AF100956+AF027865 sim96_LIN fragment 863:804 890:831 0.790 +:+ .:. ## cumulative nmp: 0.001
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